Alan M. Cleary

15 papers A 1B 2C 1Journal 7Unranked 4
YearRankTypeTitle / Venue / Authors
2025 B conf
Bit Packed Encodings for Grammar-Compressed Strings Supporting Fast Random Access.
SEA
Alan M. Cleary, Joseph Winjum, Jordan Dood, Hiroki Shibata, Shunsuke Inenaga
2024 C conf
Revisiting the Folklore Algorithm for Random Access to Grammar-Compressed Strings.
SPIRE
Alan M. Cleary, Joseph Winjum, Jordan Dood, Shunsuke Inenaga
2024 J jnl
Revisiting the Folklore Algorithm for Random Access to Grammar-Compressed Strings.
CoRR
Alan M. Cleary, Joseph Winjum, Jordan Dood, Shunsuke Inenaga
2024 J jnl
The CDAWG Index and Pattern Matching on Grammar-Compressed Strings.
CoRR
Alan M. Cleary, Joseph Winjum, Jordan Dood, Shunsuke Inenaga
2023 B conf
Constructing the CDAWG CFG using LCP-Intervals.
DCC
Alan M. Cleary, Jordan Dood
2023 J jnl
Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes.
Nucleic Acids Res.
Alan M. Cleary, Andrew D. Farmer
2023 — conf
Genotype-to-Phenotype Associations with Frequented Region Variants.
BIBM
Indika Kahanda, Buwani Manuweera, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary, Joann Mudge
2022 J jnl
Ten simple rules for developing visualization tools in genomics.
PLoS Comput. Biol.
Éloi Durant, Mathieu Rouard, Eric W. Ganko, Cédric Muller, Alan M. Cleary, Andrew D. Farmer, Matthieu G. Conte, François Sabot
2019 J jnl
Exploring Frequented Regions in Pan-Genomic Graphs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alan M. Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge, Brendan Mumey
2019 — conf
Pangenome-Wide Association Studies with Frequented Regions.
BCB
Buwani Manuweera, Joann Mudge, Indika Kahanda, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary
2019 — conf
Poster: Pangenome-Wide Association Studies with Frequented Regions.
BCB
Buwani Manuweera, Joann Mudge, Indika Kahanda, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary
2018 J jnl
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny.
Bioinform.
Alan M. Cleary, Andrew D. Farmer
2017 — conf
Exploring Frequented Regions in Pan-Genomic Graphs.
BCB
Alan M. Cleary, Indika Kahanda, Brendan Mumey, Joann Mudge, Thiruvarangan Ramaraj
2016 J jnl
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.
Nucleic Acids Res.
Sudhansu Dash, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, Alex G. Rice, Jugpreet Singh, Pooja E. Umale, Nathan T. Weeks, Andrew P. Wilkey, Andrew D. Farmer, Steven B. Cannon
2015 A conf
Reactive Game Engine Programming for STEM Outreach.
SIGCSE
Alan M. Cleary, Lucas Vandenbergh, John Peterson