Alain Viari

23 papers A 3B 4C 1Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2012 J jnl
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes.
PLoS Comput. Biol.
Adam Alexander Thil Smith, Eugeni Belda, Alain Viari, Claudine Médigue, David Vallenet
2012 J jnl
UniPathway: a resource for the exploration and annotation of metabolic pathways.
Nucleic Acids Res.
Anne Morgat, Eric Coissac, Elisabeth Coudert, Kristian B. Axelsen, Guillaume Keller, Amos Bairoch, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios, Alain Viari
2011 J jnl
Bacterial syntenies: an exact approach with gene quorum.
BMC Bioinform.
Yves-Pol Deniélou, Marie-France Sagot, Frédéric Boyer, Alain Viari
2009 B conf
Multiple Alignment of Biological Networks: A Flexible Approach.
CPM
Yves-Pol Deniélou, Frédéric Boyer, Alain Viari, Marie-France Sagot
2007 J jnl
Repseek, a tool to retrieve approximate repeats from large DNA sequences.
Bioinform.
Guillaume Achaz, Frédéric Boyer, Eduardo P. C. Rocha, Alain Viari, Eric Coissac
2006 J jnl
Genepi: a blackboard framework for genome annotation.
BMC Bioinform.
Stéphane Descorps-Declère, Danielle Ziébelin, François Rechenmann, Alain Viari
2006 J jnl
GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins.
BMC Bioinform.
Patrick Durand, Laurent Labarre, Alain Meil, Jean-Louis Divol, Yves Vandenbrouck, Alain Viari, Jérôme Wojcik
2006 — conf
Reconstruction of Switching Thresholds in Piecewise-Affine Models of Genetic Regulatory Networks.
HSCC
Samuel Drulhe, Giancarlo Ferrari-Trecate, Hidde de Jong, Alain Viari
2005 J jnl
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.
Bioinform.
Frédéric Boyer, Anne Morgat, Laurent Labarre, Joël Pothier, Alain Viari
2003 C conf
Ab initio reconstruction of metabolic pathways.
ECCB
Frédéric Boyer, Alain Viari
2003 A conf
How Does Computer Science Change Molecular Biology?
STACS
Alain Viari
1999 J jnl
Imagene: an integrated computer environment for sequence annotation and analysis.
Bioinform.
Claudine Médigue, François Rechenmann, Antoine Danchin, Alain Viari
1998 J jnl
Pairwide and Multiple Identification of Three-Dimensional Common Substructures in Proteins.
J. Comput. Biol.
V. Escalier, Joël Pothier, Henry Soldano, Alain Viari
1997 B conf
Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices.
CPM
Marie-France Sagot, Alain Viari
1997 J jnl
Multiple Sequence Comparison - A Peptide Matching Approach.
Theor. Comput. Sci.
Marie-France Sagot, Alain Viari, Henry Soldano
1996 B conf
A Double Combinatorial Approach to Discovering Patterns in Biological Sequences.
CPM
Marie-France Sagot, Alain Viari
1995 A conf
A Distance-Based Block Searching Algorithm.
ISMB
Marie-France Sagot, Alain Viari, Henry Soldano
1995 A conf
Cooperative Computer System For Genome Sequence Analysis.
ISMB
Claudine Médigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin
1995 J jnl
Finding flexible patterns in a text: an application to three-dimensional molecular matching.
Comput. Appl. Biosci.
Marie-France Sagot, Alain Viari, Joël Pothier, Henry Soldano
1995 B conf
Multiple Sequence Comparison: A Peptide Matching Approach.
CPM
Marie-France Sagot, Alain Viari, Henry Soldano
1995 J jnl
Searching for flexible repeated patterns using a non-transitive similarity relation.
Pattern Recognit. Lett.
Henry Soldano, Alain Viari, Marc Champesme
1991 J jnl
'Multifrequency' location and clustering of sequence patterns from proteins.
Comput. Appl. Biosci.
E. Ollivier, Henry Soldano, Alain Viari
1990 J jnl
A scale-independent signal processing method for sequence analysis.
Comput. Appl. Biosci.
Alain Viari, Henry Soldano, E. Ollivier