Alain Denise

45 papers A* 1A 1B 4C 2Journal 32Unranked 5
YearRankTypeTitle / Venue / Authors
2023 J jnl
A unifying rank aggregation framework to suitably and efficiently aggregate any kind of rankings.
Int. J. Approx. Reason.
Pierre Andrieu, Sarah Cohen-Boulakia, Miguel Couceiro, Alain Denise, Adeline Pierrot
2021 B conf
A Graph-Based Similarity Approach to Classify Recurrent Complex Motifs from Their Context in RNA Structures.
SEA
Coline Gianfrotta, Vladimir Reinharz, Dominique Barth, Alain Denise
2021 J jnl
Efficient, robust and effective rank aggregation for massive biological datasets.
Future Gener. Comput. Syst.
Pierre Andrieu, Bryan Brancotte, Laurent Bulteau, Sarah Cohen-Boulakia, Alain Denise, Adeline Pierrot, Stéphane Vialette
2021 J jnl
Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs.
PLoS Comput. Biol.
Antoine Soulé, Vladimir Reinharz, Roman Sarrazin-Gendron, Alain Denise, Jérôme Waldispühl
2019 J jnl
CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts.
BMC Bioinform.
Alexandra Zaharia, Bernard Labedan, Christine Froidevaux, Alain Denise
2019 — conf
Reliability-Aware and Graph-Based Approach for Rank Aggregation of Biological Data.
eScience
Pierre Andrieu, Bryan Brancotte, Laurent Bulteau, Sarah Cohen-Boulakia, Alain Denise, Adeline Pierrot, Stéphane Vialette
2017 J jnl
GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization.
Bioinform.
Mélanie Boudard, Dominique Barth, Julie Bernauer, Alain Denise, Johanne Cohen
2015 J jnl
Rank aggregation with ties: Experiments and Analysis.
Proc. VLDB Endow.
Bryan Brancotte, Bo Yang, Guillaume Blin, Sarah Cohen Boulakia, Alain Denise, Sylvie Hamel
2014 — conf
ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data.
DILS
Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen Boulakia
2014 J jnl
Optimisation Problems for Pairwise RNA Sequence and Structure Comparison: A Brief Survey.
Trans. Comput. Collect. Intell.
Alain Denise, Philippe Rinaudo
2013 J jnl
A new dichotomic algorithm for the uniform random generation of words in regular languages.
Theor. Comput. Sci.
Johan Oudinet, Alain Denise, Marie-Claude Gaudel
2013 J jnl
An Algorithmic Game-Theory Approach for Coarse-Grain Prediction of RNA 3D Structure.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alexis Lamiable, Franck Quessette, Sandrine Vial, Dominique Barth, Alain Denise
2013 — conf
Flexible RNA design under structure and sequence constraints using formal languages.
BCB
Yu Zhou, Yann Ponty, Stéphane Vialette, Jérôme Waldispühl, Yi Zhang, Alain Denise
2012 J jnl
Automated prediction of three-way junction topological families in RNA secondary structures.
Comput. Biol. Chem.
Alexis Lamiable, Dominique Barth, Alain Denise, Franck Quessette, Sandrine Vial, Eric Westhof
2012 J jnl
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.
Adv. Bioinformatics
Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet
2012 J jnl
Coverage-biased random exploration of large models and application to testing.
Int. J. Softw. Tools Technol. Transf.
Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud, Richard Lassaigne, Johan Oudinet, Sylvain Peyronnet
2012 C conf
Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots - (Extended Abstract).
WABI
Philippe Rinaudo, Yann Ponty, Dominique Barth, Alain Denise
2012 J jnl
Tree decomposition and parameterized algorithms for RNA structure-sequence alignment including tertiary interactions and pseudoknots.
CoRR
Philippe Rinaudo, Yann Ponty, Dominique Barth, Alain Denise
2011 J jnl
Counting RNA Pseudoknotted Structures.
J. Comput. Biol.
Cédric Saule, Mireille Régnier, Jean-Marc Steyaert, Alain Denise
2011 B conf
Uniform Monte-Carlo Model Checking.
FASE
Johan Oudinet, Alain Denise, Marie-Claude Gaudel, Richard Lassaigne, Sylvain Peyronnet
2011 B conf
Using Medians to Generate Consensus Rankings for Biological Data.
SSDBM
Sarah Cohen Boulakia, Alain Denise, Sylvie Hamel
2010 J jnl
Alignments of RNA Structures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet
2010 J jnl
Average complexity of the Jiang-Wang-Zhang pairwise tree alignment algorithm and of a RNA secondary structure alignment algorithm.
Theor. Comput. Sci.
Claire Herrbach, Alain Denise, Serge Dulucq
2010 J jnl
Controlled non uniform random generation of decomposable structures
CoRR
Alain Denise, Yann Ponty, Michel Termier
2010 J jnl
Controlled non-uniform random generation of decomposable structures.
Theor. Comput. Sci.
Alain Denise, Yann Ponty, Michel Termier
2009 J jnl
VARNA: Interactive drawing and editing of the RNA secondary structure.
Bioinform.
Kévin Darty, Alain Denise, Yann Ponty
2008 — conf
Coverage-biased Random Exploration of Models.
MBT@ETAPS
Marie-Claude Gaudel, Alain Denise, Sandrine-Dominique Gouraud, Richard Lassaigne, Johan Oudinet, Sylvain Peyronnet
2008 J jnl
Shuffling biological sequences with motif constraints.
J. Discrete Algorithms
Romain Rivière, Dominique Barth, Johanne Cohen, Alain Denise
2006 J jnl
GenRGenS: software for generating random genomic sequences and structures.
Bioinform.
Yann Ponty, Michel Termier, Alain Denise
2006 J jnl
Uniform Random Sampling of Traces in Very Large Models
CoRR
Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud, Richard Lassaigne, Sylvain Peyronnet
2006 — conf
Uniform random sampling of traces in very large models.
Random Testing
Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud, Richard Lassaigne, Sylvain Peyronnet
2005 J jnl
A Pairwise Alignment Algorithm Which Favors Clusters of Blocks.
J. Comput. Biol.
Elodie Nédélec, Thomas Moncion, Elisabeth Gassiat, Bruno Bossard, Guillemette Duchateau-Nguyen, Alain Denise, Michel Termier
2004 A conf
A Generic Method for Statistical Testing.
ISSRE
Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud
2004 J jnl
Generating functions for generating trees
CoRR
Cyril Banderier, Philippe Flajolet, Danièle Gardy, Mireille Bousquet-Mélou, Alain Denise, Dominique Gouyou-Beauchamps
2004 J jnl
Rare Events and Conditional Events on Random Strings.
Discret. Math. Theor. Comput. Sci.
Mireille Régnier, Alain Denise
2003 J jnl
The permutation-path coloring problem on trees.
Theor. Comput. Sci.
Sylvie Corteel, Mario Valencia-Pabon, Danièle Gardy, Dominique Barth, Alain Denise
2003 J jnl
Towards a computational model for -1 eukaryotic frameshifting sites.
Bioinform.
Michaël Bekaert, Laure Bidou, Alain Denise, Guillemette Duchateau-Nguyen, Jean-Paul Forest, Christine Froidevaux, Isabelle Hatin, Jean-Pierre Rousset, Michel Termier
2002 J jnl
Generating functions for generating trees.
Discret. Math.
Cyril Banderier, Mireille Bousquet-Mélou, Alain Denise, Philippe Flajolet, Danièle Gardy, Dominique Gouyou-Beauchamps
2001 A* conf
A New Way of Automating Statistical Testing Methods.
ASE
Sandrine-Dominique Gouraud, Alain Denise, Marie-Claude Gaudel, B. Marr
2001 C conf
Assessing the Statistical Significance of Overrepresented Oligonucleotides.
WABI
Alain Denise, Mireille Régnier, Mathias Vandenbogaert
2000 B conf
On the Complexity of Routing Permutations on Trees by Arc-Disjoint Paths. Extended Abstract.
LATIN
Dominique Barth, Sylvie Corteel, Alain Denise, Danièle Gardy, Mario Valencia-Pabon
1999 J jnl
Uniform Random Generation of Decomposable Structures Using Floating-Point Arithmetic.
Theor. Comput. Sci.
Alain Denise, Paul Zimmermann
1996 J jnl
Génération aléatoire et uniforme de mots.
Discret. Math.
Alain Denise
1996 J jnl
Génération aléatoire uniforme de mots de langages rationnels.
Theor. Comput. Sci.
Alain Denise
1995 J jnl
Two combinatorial statistics on Dyck paths.
Discret. Math.
Alain Denise, Rodica Simion