Aiping Wu

26 papers Journal 24Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
ARNLE model identifies prevalence potential of SARS-CoV-2 variants.
Nat. Mac. Intell.
Yuqi Liu, Jing Li, Peihan Li, Yehong Yang, Kaiying Wang, Jinhui Li, Lang Yang, Jiangfeng Liu, Leili Jia, Aiping Wu, Juntao Yang, Peng Li, Hongbin Song
2025 J jnl
Influenza virus reassortment patterns exhibit preference and continuity while uncovering cross-species transmission events.
Briefings Bioinform.
Xiao Ding, Yun Ma, Shicheng Li, Jingze Liu, Luyao Qin, Aiping Wu
2025 J jnl
TransSSVs: a Transformer-based deep learning model for accurate detection of somatic small variants in paired tumor and normal sequencing data.
Appl. Intell.
Jing Meng, Jiangyuan Wang, Jingze Liu, Wenkai Song, Ming Li, Aiping Wu, Taijiao Jiang
2024 J jnl
PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network.
Briefings Bioinform.
Jing Meng, Jingze Liu, Wenkai Song, Honglei Li, Jiangyuan Wang, Le Zhang, Yousong Peng, Aiping Wu, Taijiao Jiang
2023 J jnl
TeaBERT: An Efficient Knowledge Infused Cross-Lingual Language Model for Mapping Chinese Medical Entities to the Unified Medical Language System.
IEEE J. Biomed. Health Informatics
Luming Chen, Yifan Qi, Aiping Wu, Lizong Deng, Taijiao Jiang
2022 J jnl
An atlas of human viruses provides new insights into diversity and tissue tropism of human viruses.
Bioinform.
Sifan Ye, Congyu Lu, Ye Qiu, Heping Zheng, Xingyi Ge, Aiping Wu, Zanxian Xia, Taijiao Jiang, Haizhen Zhu, Yousong Peng
2022 — conf
Enhancing Cross-lingual Medical Concept Alignment by Leveraging Synonyms and Translations of the Unified Medical Language System.
HPCC/DSS/SmartCity/DependSys
Luming Chen, Yifan Qi, Aiping Wu, Lizong Deng, Taijiao Jiang
2022 J jnl
sitePath: a visual tool to identify polymorphism clades and help find fixed and parallel mutations.
BMC Bioinform.
Chengyang Ji, Na Han, Yexiao Cheng, Jingzhe Shang, Shenghui Weng, Rong Yang, Hangyu Zhou, Aiping Wu
2022 J jnl
vsRNAfinder: a novel method for identifying high-confidence viral small RNAs from small RNA-Seq data.
Briefings Bioinform.
Zena Cai, Ping Fu, Ye Qiu, Aiping Wu, Gaihua Zhang, Yirong Wang, Taijiao Jiang, Xing-Yi Ge, Haizhen Zhu, Yousong Peng
2021 J jnl
Comparative viromes of
Briefings Bioinform.
Lin Liu, Qin Shen, Nan Li, Yuwen He, Na Han, Xianyue Wang, Jinxin Meng, Yousong Peng, Mei Pan, Yuting Jin, Taijiao Jiang, Wenjie Tan, Jinglin Wang, Aiping Wu
2021 J jnl
Compositional diversity and evolutionary pattern of coronavirus accessory proteins.
Briefings Bioinform.
Jingzhe Shang, Na Han, Ziyi Chen, Yousong Peng, Liang Li, Hangyu Zhou, Chengyang Ji, Jing Meng, Taijiao Jiang, Aiping Wu
2021 J jnl
Identification and characterization of circRNAs encoded by MERS-CoV, SARS-CoV-1 and SARS-CoV-2.
Briefings Bioinform.
Zena Cai, Congyu Lu, Jun He, Li Liu, Yuanqiang Zou, Zheng Zhang, Zhaozhong Zhu, Xingyi Ge, Aiping Wu, Taijiao Jiang, Heping Zheng, Yousong Peng
2021 J jnl
Progress and challenge for computational quantification of tissue immune cells.
Briefings Bioinform.
Ziyi Chen, Aiping Wu
2020 J jnl
FluPhenotype - a one-stop platform for early warnings of the influenza A virus.
Bioinform.
Congyu Lu, Zena Cai, Yuanqiang Zou, Zheng Zhang, Wenjun Chen, Lizong Deng, Xiangjun Du, Aiping Wu, Lei Yang, Dayan Wang, Yuelong Shu, Taijiao Jiang, Yousong Peng
2020 J jnl
FluReassort: a database for the study of genomic reassortments among influenza viruses.
Briefings Bioinform.
Xiao Ding, Xuye Yuan, Longfei Mao, Aiping Wu, Taijiao Jiang
2020 J jnl
Phage protein receptors have multiple interaction partners and high expressions.
Bioinform.
Zheng Zhang, Fen Yu, Yuanqiang Zou, Ye Qiu, Aiping Wu, Taijiao Jiang, Yousong Peng
2020 J jnl
Tissue-specific deconvolution of immune cell composition by integrating bulk and single-cell transcriptomes.
Bioinform.
Ziyi Chen, Chengyang Ji, Qin Shen, Wei Liu, F. Xiao-Feng Qin, Aiping Wu
2019 J jnl
Cell membrane proteins with high N-glycosylation, high expression and multiple interaction partners are preferred by mammalian viruses as receptors.
Bioinform.
Zheng Zhang, Zhaozhong Zhu, Wenjun Chen, Zena Cai, Beibei Xu, Zhiying Tan, Aiping Wu, Xingyi Ge, Xinhong Guo, Zhongyang Tan, Zanxian Xia, Haizhen Zhu, Taijiao Jiang, Yousong Peng
2019 J jnl
Identification of Bridging Centrality in Complex Networks.
IEEE Access
Wei Liu, Matteo Pellegrini, Aiping Wu
2017 J jnl
cooccurNet: an R package for co-occurrence network construction and analysis.
Bioinform.
Yuanqiang Zou, Zhiqiang Wu, Lizong Deng, Aiping Wu, Fan Wu, Kenli Li, Taijiao Jiang, Yousong Peng
2016 J jnl
A novel index of protein-protein interface propensity improves interface residue recognition.
BMC Syst. Biol.
Wentao Dai, Aiping Wu, Liang-Xiao Ma, Yi-Xue Li, Taijiao Jiang, Yuan-Yuan Li
2016 J jnl
PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences.
Bioinform.
Yousong Peng, Lei Yang, Honglei Li, Yuanqiang Zou, Lizong Deng, Aiping Wu, Xiangjun Du, Dayan Wang, Yuelong Shu, Taijiao Jiang
2015 — conf
Uncover protein complexes in E.coli network.
BIBM
Wei Liu, Aiping Wu
2014 J jnl
Exploring protein domain organization by recognition of secondary structure packing interfaces.
Bioinform.
Lizong Deng, Aiping Wu, Wentao Dai, Tingrui Song, Ya Cui, Taijiao Jiang
2011 J jnl
NCACO-score: An effective main-chain dependent scoring function for structure modeling.
BMC Bioinform.
Liqing Tian, Aiping Wu, Yang Cao, Xiaoxi Dong, Yun Hu, Taijiao Jiang
2010 J jnl
Correlation of Influenza Virus Excess Mortality with Antigenic Variation: Application to Rapid Estimation of Influenza Mortality Burden.
PLoS Comput. Biol.
Aiping Wu, Yousong Peng, Xiangjun Du, Yuelong Shu, Taijiao Jiang