Ahmet Ay

17 papers Journal 12Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
OLTA: Optimizing bait seLection for TArgeted sequencing.
Bioinform.
Mete Orhun Minbay, Richard Sun, Vijay Ramachandran, Ahmet Ay, Tamer Kahveci
2025 J jnl
Regulatory Effects of Cooperativity and Signal Profile on Adaptive Dynamics in Incoherent Feedforward Loop Networks.
Silico Biol.
Necmettin Yildirim, Thomas Brew, Ahmet Ay
2022 J jnl
Pattern Discovery in Multilayer Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yuanfang Ren, Aisharjya Sarkar, Pierangelo Veltri, Ahmet Ay, Alin Dobra, Tamer Kahveci
2021 J jnl
ANCA: Alignment-Based Network Construction Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kevin Chow, Aisharjya Sarkar, Rasha Elhesha, Pietro Cinaglia, Ahmet Ay, Tamer Kahveci
2019 J jnl
Characterizing building blocks of resource constrained biological networks.
BMC Bioinform.
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
2019 — conf
Finding Conserved Patterns in Multilayer Networks.
BCB
Yuanfang Ren, Aisharjya Sarkar, Ahmet Ay, Alin Dobra, Tamer Kahveci
2018 — conf
ANCA: Alignment-based Network Construction Algorithm.
BCB
Kevin Chow, Ahmet Ay, Rasha Elhesha, Tamer Kahveci
2018 — conf
Characterizing Building Blocks of Resource Constrained Biological Networks.
BCB
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
2018 J jnl
Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci
2018 J jnl
Identification of jointly correlated gene sets.
J. Bioinform. Comput. Biol.
Yuanfang Ren, Ahmet Ay, Travis A. Gerke, Tamer Kahveci
2018 J jnl
Shortest path counting in probabilistic biological networks.
BMC Bioinform.
Yuanfang Ren, Ahmet Ay, Tamer Kahveci
2017 J jnl
Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach.
Silico Biol.
Necmettin Yildirim, Mehmet Emin Aktas, Seyma Nur Ozcan, Esra Akbas, Ahmet Ay
2016 J jnl
Identifying the topology of signaling networks from partial RNAi data.
BMC Syst. Biol.
Yuanfang Ren, Qiyao Wang, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
2015 — conf
Construction of signaling networks with incomplete RNAi data.
BIBM
Qiyao Wang, Yuanfang Ren, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
2015 J jnl
Hierarchical decomposition of dynamically evolving regulatory networks.
BMC Bioinform.
Ahmet Ay, Dihong Gong, Tamer Kahveci
2015 — conf
Multiple reference networks improve accuracy of signaling network construction.
BCB
Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci
2010 J jnl
Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects.
BMC Syst. Biol.
Jacqueline M. Dresch, Xiaozhou Liu, David N. Arnosti, Ahmet Ay