Agnieszka Rybarczyk

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Algorithms for evaluation of minimal cut sets.
J. Biomed. Informatics
Marcin Radom, Agnieszka Rybarczyk, Igor Piekarz, Piotr Formanowicz
2024 J jnl
RNA World with Inhibitors.
Entropy
Jaroslaw Synak, Agnieszka Rybarczyk, Marta Kasprzak, Jacek Blazewicz
2022 J jnl
Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia.
Bioinform.
Alastair M. Kilpatrick, Farzana Rahman, Audra Anjum, Sayane Shome, K. M. Salim Andalib, Shrabonti Banik, Sanjana F. Chowdhury, Peter Coombe, Yesid Cuesta Astroz, J. Maxwell Douglas, Pradeep Eranti, Aleyna D. Kiran, Sachendra Kumar, Hyeri Lim, Valentina Lorenzi, Tiago Lubiana, Sakib Mahmud, Rafael Puche, Agnieszka Rybarczyk, Syed Muktadir Al Sium, David Twesigomwe, Tomasz Zok, Christine A. Orengo, Iddo Friedberg, Janet Kelso, Lonnie R. Welch
2022 J jnl
RNA World Modeling: A Comparison of Two Complementary Approaches.
Entropy
Jaroslaw Synak, Agnieszka Rybarczyk, Jacek Blazewicz
2019 J jnl
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs.
Bioinform.
Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk
2018 J jnl
Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets.
Fundam. Informaticae
Dorota Formanowicz, Agnieszka Rybarczyk, Piotr Formanowicz
2018 J jnl
The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis - modeled and analyzed using a Petri net-based approach.
Biosyst.
Dorota Formanowicz, Marcin Radom, Agnieszka Rybarczyk, Piotr Formanowicz
2017 J jnl
Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems.
Bioinform.
Marcin Radom, Agnieszka Rybarczyk, Bartlomiej Szawulak, Hubert Andrzejewski, Piotr Chabelski, Adam Kozak, Piotr Formanowicz
2017 J jnl
Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA.
Comput. Biol. Chem.
Agnieszka Mickiewicz, Joanna Sarzynska, Maciej Milostan, Anna Kurzynska-Kokorniak, Agnieszka Rybarczyk, Piotr Lukasiak, Tadeusz Kulinski, Marek Figlerowicz, Jacek Blazewicz
2017 J jnl
Tabu Search for the RNA Partial Degradation Problem.
Int. J. Appl. Math. Comput. Sci.
Agnieszka Rybarczyk, Alain Hertz, Marta Kasprzak, Jacek Blazewicz
2015 J jnl
New in silico approach to assessing RNA secondary structures with non-canonical base pairs.
BMC Bioinform.
Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
2012 J jnl
Poseidon: An information retrieval and extraction system for metagenomic marine science.
Ecol. Informatics
Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz
2011 J jnl
RNA Partial Degradation Problem: Motivation, Complexity, Algorithm.
J. Comput. Biol.
Jacek Blazewicz, Marek Figlerowicz, Marta Kasprzak, Martyna Nowacka, Agnieszka Rybarczyk