Age K. Smilde

33 papers Journal 31Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Analyzing postprandial metabolomics data using multiway models: a simulation study.
BMC Bioinform.
Lu Li, Shi Yan, Barbara M. Bakker, Huub C. J. Hoefsloot, Bo Chawes, David Horner, Morten A. Rasmussen, Age K. Smilde, Evrim Acar
2023 J jnl
Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+.
PLoS Comput. Biol.
Balázs Erdos, Johan A. Westerhuis, Michiel E. Adriaens, Shauna D. O'Donovan, Ren Xie, Cécile M. Singh-Povel, Age K. Smilde, Ilja C. W. Arts
2023 J jnl
Unsupervised EHR-based phenotyping via matrix and tensor decompositions.
WIREs Data. Mining. Knowl. Discov.
Florian Becker, Age K. Smilde, Evrim Acar
2022 J jnl
Exploring dynamic metabolomics data with multiway data analysis: a simulation study.
BMC Bioinform.
Lu Li, Huub C. J. Hoefsloot, Albert A. de Graaf, Evrim Acar, Age K. Smilde
2022 — conf
Phenotyping of Cervical Cancer Risk Groups via Generalized Low-Rank Models Using Medical Questionnaires.
NAIS
Florian Becker, Mari Nygård, Jan Nygård, Age K. Smilde, Evrim Acar
2022 J jnl
Unsupervised EHR-based Phenotyping via Matrix and Tensor Decompositions.
CoRR
Florian Becker, Age K. Smilde, Evrim Acar
2021 J jnl
Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data.
PLoS Comput. Biol.
Torfinn S. Madssen, Guro F. Giskeødegård, Age K. Smilde, Johan A. Westerhuis
2020 J jnl
Increased comparability between RNA-Seq and microarray data by utilization of gene sets.
PLoS Comput. Biol.
Frans M. van der Kloet, Jeroen Buurmans, Martijs J. Jonker, Age K. Smilde, Johan A. Westerhuis
2019 J jnl
All Sparse PCA Models Are Wrong, But Some Are Useful. Part I: Computation of Scores, Residuals and Explained Variance.
CoRR
J. Camacho, Age K. Smilde, Edoardo Saccenti, Johan A. Westerhuis
2019 J jnl
Principal component analysis of binary genomics data.
Briefings Bioinform.
Yipeng Song, Johan A. Westerhuis, Nanne Aben, Magali Michaut, Lodewyk F. A. Wessels, Age K. Smilde
2018 J jnl
Dynamic elementary mode modelling of non-steady state flux data.
BMC Syst. Biol.
Abel Folch-Fortuny, Bas Teusink, Huub C. J. Hoefsloot, Age K. Smilde, Alberto Ferrer
2018 J jnl
iTOP: inferring the topology of omics data.
Bioinform.
Nanne Aben, Johan A. Westerhuis, Yipeng Song, Henk A. L. Kiers, Magali Michaut, Age K. Smilde, Lodewyk F. A. Wessels
2016 J jnl
Separating common from distinctive variation.
BMC Bioinform.
Frans M. van der Kloet, Patricia Sebastián-León, Ana Conesa, Age K. Smilde, Johan A. Westerhuis
2015 J jnl
Data Fusion in Metabolomics Using Coupled Matrix and Tensor Factorizations.
Proc. IEEE
Evrim Acar, Rasmus Bro, Age K. Smilde
2015 J jnl
Using Petri nets for experimental design in a multi-organ elimination pathway.
Comput. Biol. Medicine
Polina Reshetova, Age K. Smilde, Johan A. Westerhuis, Antoine H. C. van Kampen
2015 J jnl
Validation and selection of ODE based systems biology models: how to arrive at more reliable decisions.
BMC Syst. Biol.
Dicle Hasdemir, Huub C. J. Hoefsloot, Age K. Smilde
2014 J jnl
How informative is your kinetic model?: using resampling methods for model invalidation.
BMC Syst. Biol.
Dicle Hasdemir, Huub C. J. Hoefsloot, Johan A. Westerhuis, Age K. Smilde
2014 J jnl
Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data.
BMC Syst. Biol.
Polina Reshetova, Age K. Smilde, Antoine H. C. van Kampen, Johan A. Westerhuis
2012 J jnl
Generic framework for high-dimensional fixed-effects ANOVA.
Briefings Bioinform.
Age K. Smilde, Marieke E. Timmerman, Margriet M. W. B. Hendriks, Jeroen J. Jansen, Huub C. J. Hoefsloot
2011 J jnl
To aggregate or not to aggregate high-dimensional classifiers.
BMC Bioinform.
Cheng-Jian Xu, Huub C. J. Hoefsloot, Age K. Smilde
2009 J jnl
A structured overview of simultaneous component based data integration.
BMC Bioinform.
Katrijn Van Deun, Age K. Smilde, Mariët J. van der Werf, Henk A. L. Kiers, Iven Van Mechelen
2009 J jnl
Crossfit analysis: a novel method to characterize the dynamics of induced plant responses.
BMC Bioinform.
Jeroen J. Jansen, Nicole M. van Dam, Huub C. J. Hoefsloot, Age K. Smilde
2009 J jnl
Improving the analysis of designed studies by combining statistical modelling with study design information.
BMC Bioinform.
Uwe Thissen, Suzan Wopereis, Sjoerd A. A. van den Berg, Ivana Bobeldijk, Robert Kleemann, Teake Kooistra, Ko Willems van Dijk, Ben van Ommen, Age K. Smilde
2009 J jnl
Integrating functional genomics data using maximum likelihood based simultaneous component analysis.
BMC Bioinform.
Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. L. Kiers, Age K. Smilde
2009 J jnl
Matrix correlations for high-dimensional data: the modified RV-coefficient.
Bioinform.
Age K. Smilde, Henk A. L. Kiers, S. Bijlsma, C. M. Rubingh, M. J. van Erk
2007 J jnl
A comparison of various methods for multivariate regression with highly collinear variables.
Stat. Methods Appl.
Henk A. L. Kiers, Age K. Smilde
2007 J jnl
Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.
Bioinform.
María José Nueda, Ana Conesa, Johan A. Westerhuis, Huub C. J. Hoefsloot, Age K. Smilde, Manuel Talón, Alberto Ferrer
2007 J jnl
Statistical validation of megavariate effects in ASCA.
BMC Bioinform.
Daniel J. Vis, Johan A. Westerhuis, Age K. Smilde, Jan van der Greef
2006 J jnl
Single channel event (SCE) for managing sensor failures in MSPC.
Comput. Chem. Eng.
Henk-Jan Ramaker, Eric N. M. van Sprang, Johan A. Westerhuis, Age K. Smilde
2005 J jnl
ANOVA-simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data.
Bioinform.
Age K. Smilde, Jeroen J. Jansen, Huub C. J. Hoefsloot, Robert-Jan A. N. Lamers, Jan van der Greef, Marieke E. Timmerman
2004 J jnl
Analysis of longitudinal metabolomics data.
Bioinform.
Jeroen J. Jansen, Huub C. J. Hoefsloot, Hans F. M. Boelens, Jan van der Greef, Age K. Smilde
2004 — book
Multi-way Analysis with Applications in the Chemical Sciences.
Age K. Smilde, Rasmus Bro, Paul Geladi
1998 J jnl
A multiway 3D QSAR analysis of a series of (S)-N-[(1-ethyl-2-pyrrolidinyl)methyl]-6-methoxybenzamides.
J. Comput. Aided Mol. Des.
Jonas Nilsson, Evert J. Homan, Age K. Smilde, Cor J. Grol, Håkan Wikstrüm