Aedín C. Culhane

22 papers Journal 20
YearRankTypeTitle / Venue / Authors
2025 J jnl
Learning and teaching biological data science in the Bioconductor community.
PLoS Comput. Biol.
Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean R. Davis, Maria A. Doyle, Ludwig Geistlinger, Andrew R. Ghazi, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson
2024 J jnl
Learning and teaching biological data science in the Bioconductor community.
CoRR
Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson
2023 J jnl
Curated single cell multimodal landmark datasets for R/Bioconductor.
PLoS Comput. Biol.
Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
2016 J jnl
Dimension reduction techniques for the integrative analysis of multi-omics data.
Briefings Bioinform.
Chen Meng, Oana A. Zeleznik, Gerhard G. Thallinger, Bernhard Küster, Amin Moghaddas Gholami, Aedín C. Culhane
2016 — ch.
Integrative Exploratory Analysis of Two or More Genomic Datasets.
Statistical Genomics
Chen Meng, Aedín C. Culhane
2016 J jnl
Public data and open source tools for multi-assay genomic investigation of disease.
Briefings Bioinform.
Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron
2014 J jnl
A multivariate approach to the integration of multi-omics datasets.
BMC Bioinform.
Chen Meng, Bernhard Küster, Aedín C. Culhane, Amin Moghaddas Gholami
2013 J jnl
RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface.
Bioinform.
Markus S. Schröder, Daniel Gusenleitner, John Quackenbush, Aedín C. Culhane, Benjamin Haibe-Kains
2013 J jnl
Significance Analysis of Prognostic Signatures.
PLoS Comput. Biol.
Andrew H. Beck, Nicholas W. Knoblauch, Marco M. Hefti, Jennifer Kaplan, Stuart J. Schnitt, Aedín C. Culhane, Markus S. Schröder, Thomas Risch, John Quackenbush, Benjamin Haibe-Kains
2012 J jnl
Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments.
Nucleic Acids Res.
Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedín C. Culhane, Anna Farne, Alexey Filippov, Ele Holloway, Andrey Klebanov, Nataliya Kryvych, Natalja Kurbatova, Pavel Kurnosov, James Malone, Olga Melnichuk, Robert Petryszak, Nikolay Pultsin, Gabriella Rustici, Andrew Tikhonov, Ravensara S. Travillian, Eleanor Williams, Andrey Zorin, Helen E. Parkinson, Alvis Brazma
2012 J jnl
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.
Nucleic Acids Res.
Aedín C. Culhane, Markus S. Schröder, Razvan Sultana, Shaita C. Picard, Enzo N. Martinelli, Caroline Kelly, Benjamin Haibe-Kains, Misha Kapushesky, Anne-Alyssa St Pierre, William Flahive, Kermshlise C. Picard, Daniel Gusenleitner, Gerald Papenhausen, Niall O'Connor, Mick Correll, John Quackenbush
2012 J jnl
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.
Nucleic Acids Res.
Shannan J. Ho Sui, Kimberly Begley, Dorothy Reilly, Brad Chapman, Ray McGovern, Philippe Rocca-Serra, Eamonn Maguire, Gabriel M. Altschuler, Terah A. A. Hansen, Ramakrishna Sompallae, Andrei Krivtsov, Ramesh A. Shivdasani, Scott A. Armstrong, Aedín C. Culhane, Mick Correll, Susanna-Assunta Sansone, Oliver Hofmann, Winston Hide
2012 J jnl
iBBiG: iterative binary bi-clustering of gene sets.
Bioinform.
Daniel Gusenleitner, Eleanor Howe, Stefan Bentink, John Quackenbush, Aedín C. Culhane
2010 J jnl
GeneSigDB - a curated database of gene expression signatures.
Nucleic Acids Res.
Aedín C. Culhane, Thomas Schwarzl, Razvan Sultana, Kermshlise C. Picard, Shaita C. Picard, Tim H. Lu, Katherine R. Franklin, Simon J. French, Gerald Papenhausen, Mick Correll, John Quackenbush
2009 — ch.
AI Methods for Analyzing Microarray Data.
Encyclopedia of Artificial Intelligence
Amira Djebbari, Aedín C. Culhane, Alice Armstrong, John Quackenbush
2007 J jnl
Integrating transcription factor binding site information with gene expression datasets.
Bioinform.
Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins
2006 J jnl
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.
BMC Bioinform.
Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane
2005 J jnl
MADE4: an R package for multivariate analysis of gene expression data.
Bioinform.
Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins
2005 J jnl
Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data.
BMC Bioinform.
Florent Baty, Michel P. Bihl, Guy Perrière, Aedín C. Culhane, Martin H. Brutsche
2004 J jnl
Expression Profiler: next generation - an online platform for analysis of microarray data.
Nucleic Acids Res.
Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma
2003 J jnl
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.
BMC Bioinform.
Aedín C. Culhane, Guy Perrière, Desmond G. Higgins
2002 J jnl
Between-group analysis of microarray data.
Bioinform.
Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins