Adrien Rougny

13 papers Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Graph databases in systems biology: a systematic review.
Briefings Bioinform.
Ilya Mazein, Adrien Rougny, Alexander Mazein, Ron Henkel, Lea Gütebier, Lea Michaelis, Marek Ostaszewski, Reinhard Schneider, Venkata P. Satagopam, Lars Juhl Jensen, Dagmar Waltemath, Judith A. H. Wodke, Irina Balaur
2023 J jnl
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.
Frontiers Bioinform.
Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski
2023 J jnl
StonPy: a tool to parse and query collections of SBGN maps in a graph database.
Bioinform.
Adrien Rougny, Irina Balaur, Augustin Luna, Alexander Mazein
2021 J jnl
A detailed map of coupled circadian clock and cell cycle with qualitative dynamics validation.
BMC Bioinform.
Adrien Rougny, Loïc Paulevé, Michèle Teboul, Franck Delaunay
2021 J jnl
Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling.
Briefings Bioinform.
Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider
2021 J jnl
SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
Briefings Bioinform.
Adrien Rougny, Vasundra Touré, John Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly A. Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein
2020 J jnl
Systems biology graphical notation markup language (SBGNML) version 0.3.
J. Integr. Bioinform.
Frank T. Bergmann, Tobias Czauderna, Ugur Dogrusoz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov, Augustin Luna
2019 J jnl
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integr. Bioinform.
Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna
2019 J jnl
sbgntikz - a TikZ library to draw SBGN maps.
Bioinform.
Adrien Rougny
2016 — —
Méthodes qualitatives pour la construction et l'analyse des réseaux moléculaires SBGN. (Qualitative methods for the construction and the analysis of SBGN molecular networks).
Adrien Rougny
2016 J jnl
Qualitative dynamics semantics for SBGN process description.
BMC Syst. Biol.
Adrien Rougny, Christine Froidevaux, Laurence Calzone, Loïc Paulevé
2015 — conf
Completing signaling networks by abductive reasoning with perturbation experiments.
ILP (Late Breaking Papers)
Adrien Rougny, Yoshitaka Yamamoto, Hidetomo Nabeshima, Gauvain Bourgne, Anne Poupon, Katsumi Inoue, Christine Froidevaux
2014 — conf
Completing SBGN-AF Networks by Logic-Based Hypothesis Finding.
FMMB
Yoshitaka Yamamoto, Adrien Rougny, Hidetomo Nabeshima, Katsumi Inoue, Hisao Moriya, Christine Froidevaux, Koji Iwanuma