Adrien Coulet

73 papers C 3Misc 2Journal 34Unranked 32
YearRankTypeTitle / Venue / Authors
2026 J jnl
Clinical Data Goes MEDS? Let's OWL make sense of it.
CoRR
Alberto Marfoglia, Jong Ho Jhee, Adrien Coulet
2025 J jnl
Comparing representations of long clinical texts for the task of patient note-identification.
CoRR
Safa Alsaidi, Marc Vincent, Olivia Boyer, Nicolas Garcelon, Miguel Couceiro, Adrien Coulet
2025 J jnl
Efficient extraction of medication information from clinical notes: an evaluation in 2 languages.
J. Am. Medical Informatics Assoc.
Thibaut Fabacher, Erik-André Sauleau, Emmanuelle Arcay, Bineta Faye, Maxime Alter, Archia Chahard, Nathan Miraillet, Adrien Coulet, Aurélie Névéol
2025 J jnl
Efficient extraction of medication information from clinical notes: an evaluation in two languages.
CoRR
Thibaut Fabacher, Erik-André Sauleau, Emmanuelle Arcay, Bineta Faye, Maxime Alter, Archia Chahard, Nathan Miraillet, Adrien Coulet, Aurélie Névéol
2025 J jnl
Enhancing clinical data warehousing with provenance data to support longitudinal analyses and large file management: The gitOmmix approach for genomic and image data.
J. Biomed. Informatics
Maxime Wack, Adrien Coulet, Anita Burgun, Bastien Rance
2025 — conf
Predicting Clinical Outcomes from Patient Care Pathways Represented with Temporal Knowledge Graphs.
ESWC (1)
Jong Ho Jhee, Alberto Megina, Pacôme Constant dit Beaufils, Matilde Karakachoff, Richard Redon, Alban Gaignard, Adrien Coulet
2025 J jnl
Predicting clinical outcomes from patient care pathways represented with temporal knowledge graphs.
CoRR
Jong Ho Jhee, Alberto Megina, Pacôme Constant dit Beaufils, Matilde Karakachoff, Richard Redon, Alban Gaignard, Adrien Coulet
2025 — conf
Prédiction d'événements cliniques à partir des parcours de soins de patients représentés par des graphes de connaissances temporels.
IC
Jong Ho Jhee, Alberto Megina, Pacôme Constant dit Beaufils, Matilde Karakachoff, Richard Redon, Alban Gaignard, Adrien Coulet
2025 — conf
Results of the Ontology Alignment Evaluation Initiative 2025.
OM@ISWC
Mina Abd Nikooie Pour, Eva Blomqvist, Pedro Giesteira Cotovio, Adrien Coulet, Lucas Ferraz, Sven Hertling, Sarika Jain, Ernesto Jiménez-Ruiz, Felix Kraus, Patrick Lambrix, Huanyu Li, Ying Li, Xianhao Liu, Pierre Monnin, Heiko Paulheim, Catia Pesquita, Abhisek Sharma, Pavel Shvaiko, Marta Contreiras Silva, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou
2024 — conf
Comparing NER Approaches on French Clinical Text, with Easy-to-Reuse Pipelines.
MIE
Thibault Hubert, Ghislain Vaillant, Olivier Birot, Camila Arias, Antoine Neuraz, Adrien Coulet
2024 J jnl
Deep Reinforcement Learning for Personalized Diagnostic Decision Pathways Using Electronic Health Records: A Comparative Study on Anemia and Systemic Lupus Erythematosus.
CoRR
Lillian Muyama, Antoine Neuraz, Adrien Coulet
2024 J jnl
Deep Reinforcement Learning for personalized diagnostic decision pathways using Electronic Health Records: A comparative study on anemia and Systemic Lupus Erythematosus.
Artif. Intell. Medicine
Lillian Muyama, Antoine Neuraz, Adrien Coulet
2024 J jnl
Facilitating phenotyping from clinical texts: the medkit library.
Bioinform.
Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024 J jnl
Facilitating phenotyping from clinical texts: the medkit library.
CoRR
Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024 J jnl
Machine learning approaches for the discovery of clinical pathways from patient data: A systematic review.
J. Biomed. Informatics
Lillian Muyama, Antoine Neuraz, Adrien Coulet
2024 — conf
Prompting Large Language Models for Supporting the Differential Diagnosis of Anemia.
FLLM
Elisa Castagnari, Lillian Muyama, Adrien Coulet
2024 J jnl
Prompting Large Language Models for Supporting the Differential Diagnosis of Anemia.
CoRR
Elisa Castagnari, Lillian Muyama, Adrien Coulet
2024 — conf
Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings.
SWAT4HCLS
Jong Ho Jhee, Alice Rogier, Dune Giraud, Emma Pinet, Brigitte Sabatier, Bastien Rance, Adrien Coulet
2024 — conf
Results of the Ontology Alignment Evaluation Initiative 2024.
OM@ISWC
Mina Abd Nikooie Pour, Alsayed Algergawy, Eva Blomqvist, Patrice Buche, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Daniel Faria, Lucas Ferraz, Pedro Giesteira Cotovio, Yuan He, Sven Hertling, Ian Horrocks, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Felix Kraus, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Heiko Paulheim, Catia Pesquita, Abhisek Sharma, Pavel Shvaiko, Marta Contreiras Silva, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou
2024 J jnl
Step-by-Step Guidance to Differential Anemia Diagnosis with Real-World Data and Deep Reinforcement Learning.
CoRR
Lillian Muyama, Estelle Lu, Geoffrey Cheminet, Jacques Pouchot, Bastien Rance, Anne-Isabelle Tropeano, Antoine Neuraz, Adrien Coulet
2023 — conf
Evaluating the Portability of Rheumatoid Arthritis Phenotyping Algorithms: A Case Study on French EHRs.
MIE
Thibaut Fabacher, Erik-André Sauleau, Noémie Leclerc Du Sablon, Hugo Bergier, Jacques-Eric Gottenberg, Adrien Coulet, Aurélie Névéol
2023 J jnl
Extracting Diagnosis Pathways from Electronic Health Records Using Deep Reinforcement Learning.
CoRR
Lillian Muyama, Antoine Neuraz, Adrien Coulet
2023 — conf
Results of the Ontology Alignment Evaluation Initiative 2023.
OM@ISWC
Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou
2023 — conf
TAXN: Translate Align Extract Normalize, a Multilingual Extraction Tool for Clinical Texts.
MedInfo
Antoine Neuraz, Ivan Lerner, Olivier Birot, Camila Arias, Larry Han, Clara-Lea Bonzel, Tianxi Cai, Kim Tâm Huynh, Adrien Coulet
2022 — conf
An analogy based framework for patient-stay identification in healthcare.
ICCBR Workshops
Safa Alsaidi, Miguel Couceiro, Esteban Marquer, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet
2022 J jnl
Discovering alignment relations with Graph Convolutional Networks: A biomedical case study.
Semantic Web
Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet
2022 — conf
Exploring Analogical Inference in Healthcare.
IARML@IJCAI
Safa Alsaidi, Miguel Couceiro, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet
2022 — conf
Matching pharmacogenomic knowledge: particularities, results, and perspectives.
OM@ISWC
Pierre Monnin, Adrien Coulet
2021 — conf
Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicales.
EGC
Walid Hafiane, Joël Legrand, Yannick Toussaint, Adrien Coulet
2021 J jnl
Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining.
BMC Medical Informatics Decis. Mak.
Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet
2021 J jnl
Syntax-based transfer learning for the task of biomedical relation extraction.
J. Biomed. Semant.
Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet
2021 — conf
Using an Ontological Representation of Chemotherapy Toxicities for Guiding Information Extraction and Integration from EHRs.
MedInfo
Alice Rogier, Adrien Coulet, Bastien Rance
2020 J jnl
Experiments on transfer learning architectures for biomedical relation extraction.
CoRR
Walid Hafiane, Joël Legrand, Yannick Toussaint, Adrien Coulet
2020 J jnl
Investigating ADR mechanisms with knowledge graph mining and explainable AI.
CoRR
Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet
2020 J jnl
Knowledge Reconciliation of n-ary Relations.
CoRR
Pierre Monnin, Miguel Couceiro, Amedeo Napoli, Adrien Coulet
2020 Misc conf
Knowledge-Based Matching of n-ary Tuples.
ICCS
Pierre Monnin, Miguel Couceiro, Amedeo Napoli, Adrien Coulet
2020 J jnl
Rediscovering alignment relations with Graph Convolutional Networks.
CoRR
Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet
2020 — conf
Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study.
ALGOS
Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet
2020 J jnl
Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study.
CoRR
Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet
2019 C conf
Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk.
AIES
Stephen Pfohl, Ben J. Marafino, Adrien Coulet, Fátima Rodriguez, Latha Palaniappan, Nigam H. Shah
2019 — conf
Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results.
DL4KG@ESWC
Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet
2019 — book
Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicales. (Mappings between data, texts and knowledge for biomedical knowledge discovery).
Adrien Coulet
2019 J jnl
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison.
BMC Bioinform.
Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet
2018 — conf
Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping.
FCA4AI@IJCAI
Pierre Monnin, Amedeo Napoli, Adrien Coulet
2018 — conf
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach.
SWAT4LS
Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet
2018 J jnl
Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk.
CoRR
Stephen Pfohl, Ben J. Marafino, Adrien Coulet, Fátima Rodriguez, Latha Palaniappan, Nigam H. Shah
2018 — conf
Syntax-based Transfer Learning for the Task of Biomedical Relation Extraction.
Louhi@EMNLP
Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet
2017 J jnl
Discovering associations between adverse drug events using pattern structures and ontologies.
J. Biomed. Semant.
Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
2017 J jnl
Learning from biomedical linked data to suggest valid pharmacogenes.
J. Biomed. Semant.
Kevin Dalleau, Yassine Marzougui, Sébastien Da Silva, Patrice Ringot, Ndeye Coumba Ndiaye, Adrien Coulet
2017 J jnl
PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units.
PeerJ Prepr.
Pierre Monnin, Clément Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet
2017 C conf
Using Formal Concept Analysis for Checking the Structure of an Ontology in LOD: The Example of DBpedia.
ISMIS
Pierre Monnin, Mario Lezoche, Amedeo Napoli, Adrien Coulet
2016 J jnl
Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics.
ERCIM News
Adrien Coulet, Malika Smaïl-Tabbone
2015 — conf
Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs.
BioNLP@IJCNLP
Mohsen Hassan, Olfa Makkaoui, Adrien Coulet, Yannick Toussaint
2015 — conf
Suggesting Valid Pharmacogenes by Mining Linked Data.
SWAT4LS
Kevin Dalleau, Ndeye Coumba Ndiaye, Adrien Coulet
2014 — conf
Learning Subgraph Patterns from text for Extracting Disease - Symptom Relationships.
DMNLP@PKDD/ECML
Mohsen Hassan, Adrien Coulet, Yannick Toussaint
2014 — conf
Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability.
DILS
Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
2013 — conf
Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology.
DMoLD
Mehwish Alam, Melisachew Wudage Chekol, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
2013 C conf
Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data.
ICFCA
Adrien Coulet, Florent Domenach, Mehdi Kaytoue, Amedeo Napoli
2012 — conf
Formal Concept Analysis Applied to Transcriptomic Data.
CLA
Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
2012 — conf
Formal Concept Analysis Applied to Transcriptomic Data.
FCA4AI@ECAI
Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
2012 J jnl
The state of the art in text mining and natural language processing for pharmacogenomics.
J. Biomed. Informatics
Adrien Coulet, K. Bretonnel Cohen, Russ B. Altman
2012 J jnl
Using ontology-based annotation to profile disease research.
J. Am. Medical Informatics Assoc.
Yi Liu, Adrien Coulet, Paea LePendu, Nigam H. Shah
2011 J jnl
Integration and publication of heterogeneous text-mined relationships on the Semantic Web.
J. Biomed. Semant.
Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah
2011 J jnl
NCBO Resource Index: Ontology-based search and mining of biomedical resources.
J. Web Semant.
Clément Jonquet, Paea LePendu, Sean M. Falconer, Adrien Coulet, Natalya Fridman Noy, Mark A. Musen, Nigam H. Shah
2010 Misc conf
Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application.
Pacific Symposium on Biocomputing
Adrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman
2010 — conf
Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical.
IC
Clément Jonquet, Adrien Coulet, Nigam H. Shah, Mark A. Musen
2010 J jnl
Using text to build semantic networks for pharmacogenomics.
J. Biomed. Informatics
Adrien Coulet, Nigam H. Shah, Yael Garten, Mark A. Musen, Russ B. Altman
2008 — —
Construction et utilisation d'une base de connaissances pharmacogénomique pour l'intégration de données et la découverte de connaissances. (Construction and use of a pharmacogenomic knowledge base for data integration and knowledge discovery).
Adrien Coulet
2008 — conf
Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics.
Description Logics
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
2008 J jnl
Ontology-guided data preparation for discovering genotype-phenotype relationships.
BMC Bioinform.
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
2008 — conf
Role Assertion Analysis: a proposed method for ontology refinement through assertion learning.
STAIRS
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
2006 — conf
SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies.
DILS
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
2006 — conf
Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing.
OTM Workshops (1)
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes