Adam M. Phillippy

19 papers B 1Journal 17Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
ModDotPlot - rapid and interactive visualization of tandem repeats.
Bioinform.
Alexander P. Sweeten, Michael C. Schatz, Adam M. Phillippy
2024 J jnl
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets.
Bioinform.
Bryce Kille, Michael G. Nute, Victor Huang, Eddie Kim, Adam M. Phillippy, Todd J. Treangen
2023 J jnl
Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation.
Bioinform.
Bryce Kille, Erik Garrison, Todd J. Treangen, Adam M. Phillippy
2022 J jnl
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps.
Bioinform.
Mitchell R. Vollger, Peter Kerpedjiev, Adam M. Phillippy, Evan E. Eichler
2020 J jnl
Weighted minimizer sampling improves long read mapping.
Bioinform.
Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy
2019 J jnl
HLA*LA - HLA typing from linearly projected graph alignments.
Bioinform.
Alexander T. Dilthey, Alexander J. Mentzer, Raphael Carapito, Clare Cutland, Nezih Cereb, Shabir A Madhi, Arang Rhie, Sergey Koren, Seiamak Bahram, Gil McVean, Adam M. Phillippy
2019 J jnl
Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
PLoS Comput. Biol.
Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
2018 J jnl
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.
J. Comput. Biol.
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
2018 J jnl
A fast adaptive algorithm for computing whole-genome homology maps.
Bioinform.
Chirag Jain, Sergey Koren, Alexander T. Dilthey, Adam M. Phillippy, Srinivas Aluru
2018 J jnl
MUMmer4: A fast and versatile genome alignment system.
PLoS Comput. Biol.
Guillaume Marçais, Arthur L. Delcher, Adam M. Phillippy, Rachel Coston, Steven L. Salzberg, Aleksey V. Zimin
2017 B conf
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.
RECOMB
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
2014 J jnl
Automated ensemble assembly and validation of microbial genomes.
BMC Bioinform.
Sergey Koren, Todd J. Treangen, Christopher Michael Hill, Mihai Pop, Adam M. Phillippy
2013 J jnl
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies.
Briefings Bioinform.
Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop
2011 J jnl
Interactive metagenomic visualization in a Web browser.
BMC Bioinform.
Brian D. Ondov, Nicholas H. Bergman, Adam M. Phillippy
2009 J jnl
Efficient oligonucleotide probe selection for pan-genomic tiling arrays.
BMC Bioinform.
Adam M. Phillippy, Xiangyu Deng, Wei Zhang, Steven L. Salzberg
2009 J jnl
Insignia: a DNA signature search web server for diagnostic assay development.
Nucleic Acids Res.
Adam M. Phillippy, Kunmi Ayanbule, Nathan J. Edwards, Steven L. Salzberg
2007 J jnl
Comprehensive DNA Signature Discovery and Validation.
PLoS Comput. Biol.
Adam M. Phillippy, Jacquline A. Mason, Kunmi Ayanbule, Daniel D. Sommer, Elisa Taviani, Anwar Huq, Rita R. Colwell, Ivor T. Knight, Steven L. Salzberg
2007 — conf
Knowledge discovery using the sand spatial browser.
DG.O
Hanan Samet, Adam M. Phillippy, Jagan Sankaranarayanan
2004 J jnl
Comparative genome assembly.
Briefings Bioinform.
Mihai Pop, Adam M. Phillippy, Arthur L. Delcher, Steven Salzberg