Adam M. Novak

16 papers B 2C 2Journal 11
YearRankTypeTitle / Venue / Authors
2021 J jnl
Efficient dynamic variation graphs.
Bioinform.
Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison
2020 J jnl
Distance indexing and seed clustering in sequence graphs.
Bioinform.
Xian Chang, Jordan Eizenga, Adam M. Novak, Jouni Sirén, Benedict Paten
2020 J jnl
Haplotype-aware graph indexes.
Bioinform.
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
2019 J jnl
Sequence tube maps: making graph genomes intuitive to commuters.
Bioinform.
Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Tan, Benedict Paten, Daniel R. Zerbino
2018 J jnl
A Flow Procedure for Linearization of Genome Sequence Graphs.
J. Comput. Biol.
David Haussler, Maciej Smuga-Otto, Jordan M. Eizenga, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov
2018 J jnl
A graph-based approach to diploid genome assembly.
Bioinform.
Shilpa Garg, Mikko Rautiainen, Adam M. Novak, Erik Garrison, Richard Durbin, Tobias Marschall
2018 C conf
Haplotype-aware graph indexes.
WABI
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
2018 J jnl
Haplotype-aware graph indexes.
CoRR
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin
2018 J jnl
Superbubbles, Ultrabubbles, and Cacti.
J. Comput. Biol.
Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey
2017 B conf
A Flow Procedure for the Linearization of Genome Sequence Graphs.
RECOMB
David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov
2017 J jnl
A graph extension of the positional Burrows-Wheeler transform and its applications.
Algorithms Mol. Biol.
Adam M. Novak, Erik Garrison, Benedict Paten
2017 — —
Infrastructure for Scalable Analysis of Genomic Variation.
Adam M. Novak
2017 B conf
Superbubbles, Ultrabubbles and Cacti.
RECOMB
Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey
2016 C conf
A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications.
WABI
Adam M. Novak, Erik Garrison, Benedict Paten
2015 J jnl
Canonical, stable, general mapping using context schemes.
Bioinform.
Adam M. Novak, Yohei Rosen, David Haussler, Benedict Paten
2015 J jnl
The NIH BD2K center for big data in translational genomics.
J. Am. Medical Informatics Assoc.
Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler