Achim Tresch

24 papers Journal 24
YearRankTypeTitle / Venue / Authors
2026 J jnl
A spectral dimension reduction technique that improves pattern detection in multivariate spatial data.
Bioinform.
David Köhler, Niklas Kleinenkuhnen, Kiarash Rastegar, Till Baar, Chrysa Nikopoulou, Vangelis Kondylis, Vlada Milchevskaya, Matthias Schmid, Peter Tessarz, Achim Tresch
2024 J jnl
Nuclear export is a limiting factor in eukaryotic mRNA metabolism.
PLoS Comput. Biol.
Jason M. Müller, Katharina Moos, Till Baar, Kerstin C. Maier, Kristina Zumer, Achim Tresch
2019 J jnl
Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging.
Bioinform.
Henrik Failmezger, Ezgi Dursun, Sebastian Dümcke, Max Endele, Don Poron, Timm Schroeder, Anne Krug, Achim Tresch
2017 J jnl
GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis.
Bioinform.
Georg Stricker, Alexander Engelhardt, Daniel Schulz, Matthias Schmid, Achim Tresch, Julien Gagneur
2015 J jnl
Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions.
Bioinform.
Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch
2014 J jnl
Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction.
Bioinform.
Sebastian Dümcke, Johannes Bräuer, Benedict Anchang, Rainer Spang, Niko Beerenwinkel, Achim Tresch
2014 J jnl
Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data.
Bioinform.
Kemal Akman, Thomas Haaf, Silvia Gravina, Jan Vijg, Achim Tresch
2013 J jnl
Learning gene network structure from time laps cell imaging in RNAi Knock downs.
Bioinform.
Henrik Failmezger, Paurush Praveen, Achim Tresch, Holger Fröhlich
2013 J jnl
Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images.
PLoS Comput. Biol.
Henrik Failmezger, Benjamin Jaegle, Andrea Schrader, Martin Hülskamp, Achim Tresch
2013 J jnl
Unsupervised automated high throughput phenotyping of RNAi time-lapse movies.
BMC Bioinform.
Henrik Failmezger, Holger Fröhlich, Achim Tresch
2012 J jnl
Automatic post-picking using MAPPOS improves particle image detection from Cryo-EM micrographs
CoRR
Ramin Norousi, Stephan Wickles, Christoph Leidig, Thomas Becker, Volker J. Schmid, Roland Beckmann, Achim Tresch
2012 J jnl
Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data.
Bioinform.
Benedikt Zacher, Khalid Abnaof, Stephan Gade, Erfan Younesi, Achim Tresch, Holger Fröhlich
2012 J jnl
MC EMiNEM Maps the Interaction Landscape of the Mediator.
PLoS Comput. Biol.
Theresa Niederberger, Stefanie Etzold, Michael Lidschreiber, Kerstin C. Maier, Dietmar E. Martin, Holger Fröhlich, Patrick Cramer, Achim Tresch
2012 J jnl
Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).
Bioinform.
Björn Schwalb, Daniel Schulz, Mai Sun, Benedikt Zacher, Sebastian Dümcke, Dietmar E. Martin, Patrick Cramer, Achim Tresch
2011 J jnl
Automatic post-picking improves particle image detection from Cryo-EM micrographs
CoRR
Ramin Norousi, Stephan Wickles, Thomas Becker, Roland Beckmann, Volker J. Schmid, Achim Tresch
2011 J jnl
Fast and efficient dynamic nested effects models.
Bioinform.
Holger Fröhlich, Paurush Praveen, Achim Tresch
2011 J jnl
Selective Phenotyping, Entropy Reduction and the Mastermind Game.
BMC Bioinform.
Julien Gagneur, Markus C. Elze, Achim Tresch
2010 J jnl
QuantProReloaded: quantitative analysis of microspot immunoassays.
Bioinform.
Anika Jöcker, Johanna Sonntag, Frauke Henjes, Frank Götschel, Achim Tresch, Tim Beißbarth, Stefan Wiemann, Ulrike Korf
2010 J jnl
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.
BMC Bioinform.
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
2009 J jnl
A Bayesian Network View on Nested Effects Models.
EURASIP J. Bioinform. Syst. Biol.
Cordula Zeller, Holger Fröhlich, Achim Tresch
2009 J jnl
Classification across gene expression microarray studies.
BMC Bioinform.
Andreas Buness, Markus Ruschhaupt, Ruprecht Kuner, Achim Tresch
2008 J jnl
Analyzing gene perturbation screens with nested effects models in R and bioconductor.
Bioinform.
Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz
2007 J jnl
Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects.
J. Comput. Biol.
Achim Tresch, Tim Beißbarth, Holger Sültmann, Ruprecht Kuner, Annemarie Poustka, Andreas Buness
2007 J jnl
Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer.
Bioinform.
Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sültmann, Achim Tresch