Abubakr Shafique

18 papers A* 1Journal 12Unranked 5

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	How Fair are Foundation Models? Exploring the Role of Covariate Bias in Histopathology. FAIMI@MICCAI Abubakr Shafique, Amanda Dy, Xiaoli Qin, Najd Alshamlan, Susan Done, Dimitrios Androutsos, April Khademi
2025	J	`jnl`	Teacher-Student Model for Detecting and Classifying Mitosis in the MIDOG 2025 Challenge. CoRR Seungho Choe, Xiaoli Qin, Abubakr Shafique, Amanda Dy, Susan Done, Dimitrios Androutsos, April Khademi
2024	J	`jnl`	Analysis and Validation of Image Search Engines in Histopathology. CoRR Isaiah Lahr, Saghir Alfasly, Peyman Nejat, Jibran A. Khan, Luke Kottom, Vaishnavi Kumbhar, Areej Alsaafin, Abubakr Shafique, Sobhan Hemati, Ghazal Alabtah, Nneka I. Comfere, Dennis Murphree, Aaron Mangold, Saba Yasir, Chady Meroueh, Lisa Boardman, Vijay H. Shah, Joaquin J. Garcia, Hamid R. Tizhoosh
2024	J	`jnl`	Personalized 2D Binary Patient Codes of Tissue Images and Immunogenomic Data Through Multimodal Self-Supervised Fusion. CoRR Areej Alsaafin, Abubakr Shafique, Saghir Alfasly, Hamid R. Tizhoosh
2024	A*	`conf`	Rotation-Agnostic Image Representation Learning for Digital Pathology. CVPR Saghir Alfasly, Abubakr Shafique, Peyman Nejat, Jibran A. Khan, Areej Alsaafin, Ghazal Alabtah, Hamid R. Tizhoosh
2024	J	`jnl`	SPLICE - Streamlining Digital Pathology Image Processing. CoRR Areej Alsaafin, Peyman Nejat, Abubakr Shafique, Jibran A. Khan, Saghir Alfasly, Ghazal Alabtah, Hamid R. Tizhoosh
2023	J	`jnl`	A Preliminary Investigation into Search and Matching for Tumour Discrimination in WHO Breast Taxonomy Using Deep Networks. CoRR Abubakr Shafique, Ricardo Gonzalez, Liron Pantanowitz, Puay Hoon Tan, Alberto Machado, Ian A. Cree, Hamid R. Tizhoosh
2023	—	`conf`	Class-imbalanced Unsupervised and Semi-Supervised Domain Adaptation for Histopathology Images. EMBC Seyedeh Maryam Hosseini, Abubakr Shafique, Morteza Babaie, Hamid R. Tizhoosh
2023	J	`jnl`	Comments on 'Fast and scalable search of whole-slide images via self-supervised deep learning'. CoRR Milad Sikaroudi, Mehdi Afshari, Abubakr Shafique, Shivam Kalra, Hamid R. Tizhoosh
2023	—	`conf`	Composite Biomarker Image for Advanced Visualization in Histopathology. EMBC Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Adrian Batten, Soma Sikdar, Hamid R. Tizhoosh
2023	J	`jnl`	Composite Biomarker Image for Advanced Visualization in Histopathology. CoRR Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Adrian Batten, Soma Sikdar, Hamid R. Tizhoosh
2023	—	`conf`	Immunohistochemistry Biomarkers-Guided Image Search for Histopathology. EMBC Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Hamid R. Tizhoosh
2023	J	`jnl`	Immunohistochemistry Biomarkers-Guided Image Search for Histopathology. CoRR Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Hamid R. Tizhoosh
2023	J	`jnl`	Rotation-Agnostic Image Representation Learning for Digital Pathology. CoRR Saghir Alfasly, Abubakr Shafique, Peyman Nejat, Jibran A. Khan, Areej Alsaafin, Ghazal Alabtah, Hamid R. Tizhoosh
2023	J	`jnl`	Selection of Distinct Morphologies to Divide & Conquer Gigapixel Pathology Images. CoRR Abubakr Shafique, Saghir Alfasly, Areej Alsaafin, Peyman Nejat, Jibran A. Khan, Hamid R. Tizhoosh
2023	J	`jnl`	When is a Foundation Model a Foundation Model. CoRR Saghir Alfasly, Peyman Nejat, Sobhan Hemati, Jibran A. Khan, Isaiah Lahr, Areej Alsaafin, Abubakr Shafique, Nneka I. Comfere, Dennis Murphree, Chady Meroueh, Saba Yasir, Aaron Mangold, Lisa Boardman, Vijay H. Shah, Joaquin J. Garcia, Hamid R. Tizhoosh
2021	—	`conf`	Automatic Multi-Stain Registration of Whole Slide Images in Histopathology. EMBC Abubakr Shafique, Morteza Babaie, Mahjabin Sajadi, Adrian Batten, Soma Skdar, Hamid R. Tizhoosh
2021	J	`jnl`	Automatic Multi-Stain Registration of Whole Slide Images in Histopathology. CoRR Abubakr Shafique, Morteza Babaie, Mahjabin Sajadi, Adrian Batten, Soma Skdar, Hamid R. Tizhoosh