Abhyudai Singh

130 papers C 27Journal 28Unranked 75

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A model of stem cell dynamics with carrying capacity: The role of feedback on proliferation rate. IFAC J. Syst. Control. Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
2025	—	`conf`	Analysis of neuronal firing in stochastic models with adaptive thresholds. ECC Oliver Gambrell, Abhyudai Singh
2025	C	`conf`	Consequences of decoy site repair on stochastic fluctuations in neurotransmission. ACC Oliver Gambrell, Abhyudai Singh
2025	—	`conf`	Consequences of resource constraints on stochastic gene expression. CDC Utkarsh Singh Solanki, Abhyudai Singh, Abhilash Patel
2025	—	`conf`	Discrete Modeling of Bursty Gene Expression in Single Cells and Growing Populations. CDC Jakub Poljovka, Iryna Zabaikina, Pavol Bokes, Abhyudai Singh
2025	C	`conf`	Inferring Cell Size Control Mechanisms Through Stochastic Hybrid Modeling. ACC Sayeh Rezaee, César Nieto, Cesar Augusto Vargas Garcia, Abhyudai Singh
2025	J	`jnl`	Inferring synaptic transmission from the stochastic dynamics of the quantal content: An analytical approach. PLoS Comput. Biol. Zahra Vahdat, Oliver Gambrell, Jonas Fisch, Eckhard Friauf, Abhyudai Singh
2025	—	`conf`	Joint Distribution Dynamics of Cell Cycle Variables in Exponentially-Growing Cells with Stochastic Division. MED César Nieto, Sayeh Rezaee, Cesar Augusto Vargas Garcia, Abhyudai Singh
2025	—	`conf`	Modeling Drug Tolerance via Fluctuation Tests with Reversible Phenotypic Switching. CDC Anna Hlubinová, Pavol Bokes, Abhyudai Singh
2025	—	`conf`	Modulation of interneuronal communication by presynaptic feedback mechanisms. CDC Oliver Gambrell, Abhyudai Singh
2025	—	`conf`	Optimal strategies for sustainable harvesting of ecological populations: A stochastic approach. ECC Sayeh Rezaee, César Nieto, Abhyudai Singh
2025	J	`jnl`	Stochastic gene expression in proliferating cells: Differing noise intensity in single-cell and population perspectives. PLoS Comput. Biol. Zhanhao Zhang, Iryna Zabaikina, César Nieto, Zahra Vahdat, Pavol Bokes, Abhyudai Singh
2024	J	`jnl`	A Moments-Based Analytical Approach for Cell Size Homeostasis. IEEE Control. Syst. Lett. César Nieto, Cesar Augusto Vargas Garcia, Abhyudai Singh
2024	—	`conf`	Controlling Biomolecular Timekeeping via Regulated Gene Product Degradation. CDC Sayeh Rezaee, César Nieto, Abhyudai Singh
2024	—	`conf`	Feedforward Regulation of Interneuronal Communication. CDC Oliver Gambrell, Zahra Vahdat, Abhyudai Singh
2024	C	`conf`	Negative Feedback Regulation via an Autapse Enhances Neuronal Firing Precision. ACC Zahra Vahdat, Oliver Gambrell, Abhyudai Singh
2024	—	`conf`	Quantifying statistics of gene product copy-number fluctuations: A stochastic hybrid systems approach. CDC Zahra Vahdat, Abhyudai Singh
2023	C	`conf`	Amplification of noisy gene expression by protein burden: An analytical approach. ACC Iryna Zabaikina, Zhanhao Zhang, César Nieto, Pavol Bokes, Abhyudai Singh
2023	—	`conf`	Comparing Negative Feedback Mechanisms in Gene Expression: From Single Cells to Cell Populations. CDC Zhanhao Zhang, César Nieto, Abhyudai Singh
2023	—	`conf`	Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution. CMSB Iryna Zabaikina, Pavol Bokes, Abhyudai Singh
2023	—	`conf`	Optimizing Precision in Cellular Clocks Through Self-Regulated Accumulation Of Molecules. ICSTCC Sayeh Rezaee, César Nieto, Abhyudai Singh
2023	J	`jnl`	Reversible Transitions in a Fluctuation Assay Modify the Tail of Luria-Delbrück Distribution. Axioms Pavol Bokes, Anna Hlubinová, Abhyudai Singh
2023	—	`conf`	Stochastic dynamics of the logistic growth model subjected to environmental perturbations. CCTA Sayeh Rezaee, César Nieto, Zahra Vahdat, Abhyudai Singh
2023	J	`jnl`	Translation regulation by RNA stem-loops can reduce gene expression noise. BMC Bioinform. Candan Çelik, Pavol Bokes, Abhyudai Singh
2022	—	`conf`	Cell size control shapes fluctuations in colony population. CDC César Nieto, César Vargas-García, Juan Manuel Pedraza, Abhyudai Singh
2022	J	`jnl`	Characterizing non-exponential growth and bimodal cell size distributions in fission yeast: An analytical approach. PLoS Comput. Biol. Chen Jia, Abhyudai Singh, Ramon Grima
2022	J	`jnl`	Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis. PLoS Comput. Biol. Chen Jia, Abhyudai Singh, Ramon Grima
2022	—	`conf`	Feedback strategies for threshold crossing of protein levels at a prescribed time. MED César Nieto, Khem Raj Ghusinga, Abhyudai Singh
2022	—	`conf`	Fluctuation-based approaches to infer kinetics of cell-state switching. CDC Michael M. Saint-Antoine, Ramon Grima, Abhyudai Singh
2022	—	`conf`	Frequency-dependent modulation of stochasticity in postsynaptic neuron firing times. CDC Zahra Vahdat, Abhyudai Singh
2022	C	`conf`	Kinetic Constraints on Noise Reduction in Feedback Gene Regulatory Networks. ACC Tarun Mahajan, Abhyudai Singh, Roy D. Dar
2022	—	`conf`	Limits on inferring gene regulatory networks from single-cell measurements of unstable mRNA levels. CDC Tarun Mahajan, Michael M. Saint-Antoine, Roy D. Dar, Abhyudai Singh
2022	—	`conf`	Optimal network transmission to minimize state-estimation error and channel usage. ICSTCC Sayeh Rezaee, César Nieto, Abhyudai Singh
2022	—	`conf`	Sequestration-based feedback control of blood platelet levels. CDC Supravat Dey, Cesar Augusto Vargas Garcia, Abhyudai Singh
2022	C	`conf`	Threshold-crossing time statistics for size-dependent gene expression in growing cells. ACC César Nieto, Khem Raj Ghusinga, Cesar Vargas-García, Abhyudai Singh
2022	C	`conf`	Time triggered stochastic hybrid systems with nonlinear continuous dynamics. ACC Zahra Vahdat, Abhyudai Singh
2022	—	`conf`	Using fluctuation statistics to infer random forces impinging on a nanosensor. CCTA Mohammad Soltani, Abhyudai Singh
2021	J	`jnl`	A Population-Based Approach to Study the Effects of Growth and Division Rates on the Dynamics of Cell Size Statistics. IEEE Control. Syst. Lett. Niccoló Totis, César Nieto, Armin Küper, Cesar Augusto Vargas Garcia, Abhyudai Singh, Steffen Waldherr
2021	J	`jnl`	A modified fluctuation test for elucidating drug resistance in microbial and cancer cells. Eur. J. Control Pavol Bokes, Abhyudai Singh
2021	—	`conf`	Comparing feedback strategies for minimizing noise in gene expression event timing. MED Zahra Vahdat, Khem Raj Ghusinga, Abhyudai Singh
2021	—	`conf`	Feedforward genetic circuits regulate the precision of event timing. ECC Supravat Dey, Sherin Kannoly, Pavol Bokes, John J. Dennehy, Abhyudai Singh
2021	J	`jnl`	MicroRNA Based Feedforward Control of Intrinsic Gene Expression Noise. IEEE ACM Trans. Comput. Biol. Bioinform. Pavol Bokes, Michal Hojcka, Abhyudai Singh
2021	—	`conf`	Modulation of stochastic gene expression by nuclear export processes. CDC Madeline Smith, Mohammad Soltani, Rahul V. Kulkarni, Abhyudai Singh
2021	J	`jnl`	Noise suppression in stochastic genetic circuits using PID controllers. PLoS Comput. Biol. Saurabh Modi, Supravat Dey, Abhyudai Singh
2021	—	`conf`	Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop. CMSB Candan Çelik, Pavol Bokes, Abhyudai Singh
2021	C	`conf`	Role of intercellular coupling and delay on the synchronization of genetic oscillators. ACC Supravat Dey, Lee Tracey, Abhyudai Singh
2021	—	`conf`	Role of periodic forcing on the stochastic dynamics of a biomolecular clock. ECC Zhanhao Zhang, Supravat Dey, Abhyudai Singh
2020	—	`conf`	Controlling event timing precision for gene expression with external disturbances. CDC Khem Raj Ghusinga, Abhyudai Singh
2020	C	`conf`	Genomic decoy sites enhance the oscillatory regime of a biomolecular clock. ACC Supravat Dey, Abhyudai Singh
2020	—	`conf`	Hybrid systems framework for modeling host-parasitoid population dynamics. CDC Abhyudai Singh, Brooks Emerick
2020	—	`conf`	Information processing in unregulated and autoregulated gene expression. ECC Zahra Vahdat, Karol Nienaltowski, Zia Farooq, Michal Komorowski, Abhyudai Singh
2020	J	`jnl`	Moment analysis of stochastic hybrid systems using semidefinite programming. Autom. Khem Raj Ghusinga, Andrew G. Lamperski, Abhyudai Singh
2020	C	`conf`	Noise analysis in biochemical complex formation from stochastically produced components. ACC Zikai Xu, Khem Raj Ghusinga, Abhyudai Singh
2020	—	`conf`	Noise propagation in metabolic pathways: the role of growth-mediated feedback. CDC Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
2020	C	`conf`	Noise suppression by stochastic delays in negatively autoregulated gene expression. ACC Madeline Smith, Abhyudai Singh
2020	—	`conf`	Optimal bang-bang feedback for bursty gene expression. ECC Iryna Zabaikina, Pavol Bokes, Abhyudai Singh
2020	—	`conf`	Propagation of stochastic gene expression in the presence of decoys. CDC Supravat Dey, Abhyudai Singh
2020	—	`conf`	Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions. CMSB Candan Çelik, Pavol Bokes, Abhyudai Singh
2020	—	`conf`	Stochastic stability of a cell cycle model with "silence period". ECC Yao Li, Cesar Augusto Vargas Garcia, Abhyudai Singh
2020	—	`conf`	The Effect of Stochastic Bursting on Biological Clock Precision. ECC James MacLaurin, Abhyudai Singh
2020	J	`jnl`	Time Delays in a Genetic Positive-Feedback Circuit. IEEE Control. Syst. Lett. Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
2019	J	`jnl`	Analysis and Control of Stochastic Systems Using Semidefinite Programming Over Moments. IEEE Trans. Autom. Control. Andrew G. Lamperski, Khem Raj Ghusinga, Abhyudai Singh
2019	—	`conf`	Analysis of coupled genetic oscillators with delayed positive feedback interconnections. ECC Giulia Giordano, Abhyudai Singh, Franco Blanchini
2019	—	`conf`	Cell Volume Distributions in Exponentially Growing Populations. CMSB Pavol Bokes, Abhyudai Singh
2019	C	`conf`	Comparison of feedback strategies for noise suppression in protein level. ACC Madeline Smith, Khem Raj Ghusinga, Abhyudai Singh
2019	—	`conf`	Controlling Noisy Expression Through Auto Regulation of Burst Frequency and Protein Stability. HSB Pavol Bokes, Abhyudai Singh
2019	—	`conf`	Driving an Ornstein-Uhlenbeck Process to Desired First-Passage Time Statistics. ECC Khem Raj Ghusinga, Vaibhav Srivastava, Abhyudai Singh
2019	J	`jnl`	Efficient computation of stochastic cell-size transient dynamics. BMC Bioinform. Cesar Augusto Nieto-Acuna, Cesar Augusto Vargas Garcia, Abhyudai Singh, Juan Manuel Pedraza
2019	C	`conf`	Evaluating Pruning Methods in Gene Network Inference. CIBCB Michael M. Saint-Antoine, Abhyudai Singh
2019	—	`conf`	Modeling and characterization of neuronal synapses using stochastic hybrid systems. CDC Zahra Vahdat, Zikai Xu, Abhyudai Singh
2019	J	`jnl`	Moment Analysis of Linear Time-Varying Dynamical Systems with Renewal Transitions. SIAM J. Control. Optim. Mohammad Soltani, Abhyudai Singh
2019	—	`conf`	Noise induced bimodality in genetic circuits with monostable positive feedback. ECC Pavol Bokes, Abhyudai Singh
2019	—	`conf`	Proportional and derivative controllers for buffering noisy gene expression. CDC Saurabh Modi, Supravat Dey, Abhyudai Singh
2019	C	`conf`	Stochastic analysis of feedback control by molecular sequestration. ACC Supravat Dey, Abhyudai Singh
2018	—	`conf`	Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation. CMSB Pavol Bokes, Michal Hojcka, Abhyudai Singh
2018	—	`conf`	Control Design and Analysis of a Stochastic Event-Driven System. CDC Mohammad Soltani, Abhyudai Singh
2018	—	`conf`	Controlling organism size by regulating constituent cell numbers. CDC Saurabh Modi, Abhyudai Singh
2018	—	`conf`	Elucidating Cell Size Control Mechanisms with Stochastic Hybrid Systems. CDC Cesar Augusto Vargas Garcia, Abhyudai Singh
2018	—	`conf`	Estimating stationary characteristic functions of stochastic systems via semidefinite programming. ECC Khem Raj Ghusinga, Andrew G. Lamperski, Abhyudai Singh
2018	—	`conf`	Exact statistical moments of multi-mode stochastic hybrid systems with renewal transitions. CDC Zikai Xu, Mohammad Soltani, Abhyudai Singh
2018	—	`conf`	Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops. CDC Alberto Carignano, Sumit Mukherjee, Abhyudai Singh, Georg Seelig
2018	C	`conf`	Linear Noise Approximation for a Class of Piecewise Deterministic Markov Processes. ACC Saurabh Modi, Mohammad Soltani, Abhyudai Singh
2018	—	`conf`	Linear piecewise-deterministic Markov processes with families of random discrete events. ECC Mohammad Soltani, Abhyudai Singh
2018	J	`jnl`	Moment analysis of linear time-varying dynamical systems with renewal transitions. CoRR Mohammad Soltani, Abhyudai Singh
2018	—	`conf`	Noise propagation in feedback coupling between cell growth and metabolic activity. CDC Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
2018	C	`conf`	Prediction of Projectile Impact Point using Approximate Statistical Moments. ACC Cenk Demir, Mohammad Soltani, Abhyudai Singh
2018	J	`jnl`	iSyTE 2.0: a database for expression-based gene discovery in the eye. Nucleic Acids Res. Atul Kakrana, Andrian Yang, Deepti Anand, Djordje Djordjevic, S. Deepthi Ramachandruni, Abhyudai Singh, Hongzhan Huang, Joshua Wing Kei Ho, Salil A. Lachke
2017	—	`conf`	Approximate moment dynamics for polynomial and trigonometric stochastic systems. CDC Khem Raj Ghusinga, Mohammad Soltani, Andrew G. Lamperski, Sairaj V. Dhople, Abhyudai Singh
2017	J	`jnl`	Control design and analysis of a stochastic network control system. CoRR Mohammad Soltani, Abhyudai Singh
2017	C	`conf`	Effect of gene-expression bursts on stochastic timing of cellular events. ACC Khem Raj Ghusinga, Abhyudai Singh
2017	J	`jnl`	Linear piecewise-deterministic Markov processes with families of random discrete events. CoRR Mohammad Soltani, Abhyudai Singh
2017	J	`jnl`	Moment-based analysis of stochastic hybrid systems with renewal transitions. Autom. Mohammad Soltani, Abhyudai Singh
2017	—	`conf`	Noise mechanisms in synaptic transmission and their impact on spike-timing precision. CDC Abhyudai Singh
2017	—	`conf`	Noise propagation in a class of metabolic networks. CDC Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
2017	C	`conf`	Optimal adsorption rate: Implications of the shielding effect. ACC Cesar Augusto Vargas Garcia, Carl Agbemabiese, Abhyudai Singh
2017	J	`jnl`	Prediction and Control of Projectile Impact Point using Approximate Statistical Moments. CoRR Cenk Demir, Abhyudai Singh
2017	—	`conf`	Semidefinite bounds for moment dynamics: Application to epidemics on networks. CDC Ximing Chen, Masaki Ogura, Khem Raj Ghusinga, Abhyudai Singh, Victor M. Preciado
2017	C	`conf`	Stochastic analysis of linear time-invariant systems with renewal transitions. ACC Mohammad Soltani, Abhyudai Singh
2017	—	`conf`	The effect of multiplicity of infection on the temperateness of a bacteriophage: Implications for viral fitness. CDC Joshua A. Blotnick, Cesar Augusto Vargas Garcia, John J. Dennehy, Ryan Zurakowski, Abhyudai Singh
2016	J	`jnl`	Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes. PLoS Comput. Biol. Mohammad Soltani, Cesar Augusto Vargas Garcia, Duarte Antunes, Abhyudai Singh
2016	—	`conf`	Moment dynamics for linear time-triggered stochastic hybrid systems. CDC Mohammad Soltani, Abhyudai Singh
2016	—	`conf`	Noise reduction for enzymatic reactions: A case study for stochastic product clearance. CDC Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
2016	C	`conf`	Optimal regulation of protein degradation to schedule cellular events with precision. ACC Khem Raj Ghusinga, Abhyudai Singh
2016	—	`conf`	Optimizing phage λ survival in a changing environment: Stochastic model predictions. CDC Jessica M. Conway, John J. Dennehy, Abhyudai Singh
2016	C	`conf`	Stochastic analysis of an incoherent feedforward genetic motif. ACC Mohammad Soltani, Thierry Platini, Abhyudai Singh
2016	—	`conf`	Stochastic hybrid systems approach to modeling dynamics of cell size. CDC Cesar Augusto Vargas Garcia, Mohammad Soltani, Abhyudai Singh
2016	—	`conf`	Stochastic optimal control using semidefinite programming for moment dynamics. CDC Andrew G. Lamperski, Khem Raj Ghusinga, Abhyudai Singh
2015	C	`conf`	Approximate statistical dynamics of a genetic feedback circuit. ACC Mohammad Soltani, Cesar Augusto Vargas Garcia, Niraj Kumar, Rahul V. Kulkarni, Abhyudai Singh
2015	J	`jnl`	Conditional Moment Closure Schemes for Studying Stochastic Dynamics of Genetic Circuits. IEEE Trans. Biomed. Circuits Syst. Mohammad Soltani, Cesar Augusto Vargas Garcia, Abhyudai Singh
2015	J	`jnl`	Inferring single-cell gene expression mechanisms using stochastic simulation. Bioinform. Bernie J. Daigle Jr., Mohammad Soltani, Linda R. Petzold, Abhyudai Singh
2015	—	`conf`	Metabolic noise reduction for enzymatic reactions: The role of a negative feedback. CDC Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
2015	C	`conf`	Optimal auto-regulation to minimize first-passage time variability in protein level. ACC Khem Raj Ghusinga, Pak-Wing Fok, Abhyudai Singh
2015	—	`conf`	Theoretical predictions on the first-passage time for a gene expression model. CDC Khem Raj Ghusinga, Abhyudai Singh
2015	J	`jnl`	Transcriptional Bursting in Gene Expression: Analytical Results for General Stochastic Models. PLoS Comput. Biol. Niraj Kumar, Abhyudai Singh, Rahul V. Kulkarni
2014	—	`conf`	First-passage time calculations for a gene expression model. CDC Khem Raj Ghusinga, Abhyudai Singh
2013	—	`conf`	Computing mRNA and protein statistical moments for a renewal model of stochastic gene-expression. CDC Duarte Antunes, Abhyudai Singh
2013	—	`conf`	Conditions for invasion of synapse-forming HIV variants. CDC Cesar Augusto Vargas Garcia, Ryan Zurakowski, Abhyudai Singh
2013	C	`conf`	Stochastic analysis and inference of a two-state genetic promoter model. ACC Abhyudai Singh, Cesar Augusto Vargas Garcia, Rajesh Karmakar
2013	—	`conf`	Stochastic analysis of genetic promoter architectures with memory. CDC Abhyudai Singh, Cesar Augusto Vargas Garcia, Rajesh Karmakar
2012	—	`conf`	Quantifying stochasticity in gene-expression with extrinsic parameter fluctuations. CDC Abhyudai Singh
2012	—	`conf`	Stochastic analysis of genetic feedback circuit controlling HIV cell-fate decision. CDC Abhyudai Singh
2011	J	`jnl`	Approximate Moment Dynamics for Chemically Reacting Systems. IEEE Trans. Autom. Control. Abhyudai Singh, João Pedro Hespanha
2011	—	`conf`	Genetic negative feedback circuits for filtering stochasticity in gene expression. CDC/ECC Abhyudai Singh
2009	C	`conf`	Reducing noise through translational control in an auto-regulatory gene network. ACC Abhyudai Singh, João Pedro Hespanha
2008	—	`conf`	Noise suppression in auto-regulatory gene networks. CDC Abhyudai Singh, João Pedro Hespanha
2008	C	`conf`	Scaling of stochasticity in gene cascades. ACC Abhyudai Singh, João Pedro Hespanha
2006	—	`conf`	Lognormal Moment Closures for Biochemical Reactions. CDC Abhyudai Singh, João Pedro Hespanha
2006	C	`conf`	Moment closure techniques for stochastic models in population biology. ACC Abhyudai Singh, João Pedro Hespanha
2005	—	`conf`	Models for Multi-Specie Chemical Reactions Using Polynomial Stochastic Hybrid Systems. CDC/ECC Abhyudai Singh, João Pedro Hespanha
2004	—	`conf`	State feedback regulation of nonlinear systems using conditional integrators. CDC Abhyudai Singh, Hassan K. Khalil