Abdullah N. Arslan

45 papers B 5C 10Misc 6Journal 15Unranked 6
YearRankTypeTitle / Venue / Authors
2021 — conf
RNA Secondary Structure Database, Analysis Tool-Set, and Case-Study Results on SARS-CoV-2.
BIBM
Abdullah N. Arslan, Mutlu Mete, Anjali Kumari
2018 J jnl
A fast algorithm for all-pairs Hamming distances.
Inf. Process. Lett.
Abdullah N. Arslan
2018 — ch.
Dynamic and Fractional Programming Based Approximation Algorithms for Sequence Alignment with Constraints.
Handbook of Approximation Algorithms and Metaheuristics (2)
Abdullah N. Arslan, Ömer Egecioglu
2018 C conf
RNA secondary structure graphical rendering library.
CIBCB
Keith A. Monschke, Abdullah N. Arslan
2017 J jnl
Efficient RNA structure comparison algorithms.
J. Bioinform. Comput. Biol.
Abdullah N. Arslan, Jithendar Anandan, Eric Fry, Keith Monschke, Nitin Ganneboina, Jason Bowerman
2017 C conf
Shape Matching for Rigid Objects by Aligning Sequences Based on Boundary Change Points.
IWCIA
Abdullah N. Arslan, Nikolay Metodiev Sirakov
2015 J jnl
Fast Algorithms for Local Similarity Queries in Two Sequences.
Int. J. Found. Comput. Sci.
Abdullah N. Arslan
2015 J jnl
New algorithms for pattern matching with wildcards and length constraints.
Discret. Math. Algorithms Appl.
Abdullah N. Arslan, Betsy George, Kirsten Stor
2015 J jnl
Pattern matching with wildcards and length constraints using maximum network flow.
J. Discrete Algorithms
Abdullah N. Arslan, Dan He, Yu He, Xindong Wu
2013 J jnl
PMBC: Pattern mining from biological sequences with wildcard constraints.
Comput. Biol. Medicine
Xindong Wu, Xingquan Zhu, Yu He, Abdullah N. Arslan
2012 — conf
Weapon ontology annotation using boundary describing sequences.
SSIAI
Abdullah N. Arslan, Nikolay Metodiev Sirakov, Salvatore Attardo
2010 C conf
A Fast Longest Common Subsequence Algorithm for Similar Strings.
LATA
Abdullah N. Arslan
2010 — conf
An Efficient Multiplication Algorithm for Thin Matrices and for Matrices with Similar Rows and Columns.
CSC
Abdullah N. Arslan, Arvind Chidri
2009 — ch.
Guided Sequence Alignment.
Encyclopedia of Data Warehousing and Mining
Abdullah N. Arslan
2008 J jnl
An algorithm with linear expected running time for string editing with substitutions and substring reversals.
Inf. Process. Lett.
Abdullah N. Arslan
2007 B conf
A Largest Common d-Dimensional Subsequence of Two d-Dimensional Strings.
FCT
Abdullah N. Arslan
2007 — ch.
Dynamic and Fractional Programming-Based Approximation Algorithms for Sequence Alignment with Constraints.
Handbook of Approximation Algorithms and Metaheuristics
Ömer Egecioglu, Abdullah N. Arslan
2007 C conf
Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern Matching.
BIBE
Dan He, Abdullah N. Arslan, Yu He, Xindong Wu
2007 Misc conf
Mining Frequent Patterns with Wildcards from Biological Sequences.
IRI
Yu He, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan
2007 C conf
Phylogeny By Top Down Clustering Using a Given Multiple Alignment.
BIBE
Abdullah N. Arslan, Peyman Bizargity
2007 J jnl
Regular expression constrained sequence alignment.
J. Discrete Algorithms
Abdullah N. Arslan
2006 J jnl
A Fast Algorithm for the Constrained Multiple Sequence Alignment Problem.
Acta Cybern.
Dan He, Abdullah N. Arslan, Alan C. H. Ling
2006 Misc conf
A* Algorithms for the Constrained Multiple Sequence Alignment Problem.
IC-AI
Dan He, Abdullah N. Arslan
2006 C conf
An algorithm for string edit distance allowing substring reversals.
BIBE
Abdullah N. Arslan
2006 C conf
An improved algorithm for the regular expression constrained multiple sequence alignment problem.
BIBE
Abdullah N. Arslan, Dan He
2006 B conf
Efficient Approximate Dictionary Look-Up for Long Words over Small Alphabets.
LATIN
Abdullah N. Arslan
2006 J jnl
Efficient string matching with wildcards and length constraints.
Knowl. Inf. Syst.
Gong Chen, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan, Yu He
2006 Misc conf
Fast Motif Search in Protein Sequence Databases.
CSR
Elena Zheleva, Abdullah N. Arslan
2006 — conf
FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem.
FCS
Dan He, Abdullah N. Arslan
2006 — conf
Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem.
BIOCOMP
Dan He, Abdullah N. Arslan
2005 C conf
A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem.
BIBE
Dan He, Abdullah N. Arslan
2005 J jnl
Algorithms For The Constrained Longest Common Subsequence Problems.
Int. J. Found. Comput. Sci.
Abdullah N. Arslan, Ömer Egecioglu
2005 C conf
Multiple Sequence Alignment Containing a Sequence of Regular Expressions.
CIBCB
Abdullah N. Arslan
2005 B conf
Regular Expression Constrained Sequence Alignment.
CPM
Abdullah N. Arslan
2004 Misc conf
Algorithms for the Constrained Longest Common Subsequence Problems.
PSC
Abdullah N. Arslan, Ömer Egecioglu
2004 J jnl
Dictionary Look-Up Within Small Edit Distance.
Int. J. Found. Comput. Sci.
Abdullah N. Arslan, Ömer Egecioglu
2004 J jnl
Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints.
INFORMS J. Comput.
Abdullah N. Arslan, Ömer Egecioglu
2002 B conf
Algorithms for Local Alignment with Length Constraints.
LATIN
Abdullah N. Arslan, Ömer Egecioglu
2002 J jnl
Approximation Algorithms for Local Alignment with Length Constraints.
Int. J. Found. Comput. Sci.
Abdullah N. Arslan, Ömer Egecioglu
2002 Misc conf
Dictionary Look-Up within Small Edit Distance.
COCOON
Abdullah N. Arslan, Ömer Egecioglu
2002 C conf
Efficient Computation of Long Similar Subsequences.
SPIRE
Abdullah N. Arslan, Ömer Egecioglu
2001 B conf
A new approach to sequence comparison: normalized sequence alignment.
RECOMB
Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
2001 J jnl
A new approach to sequence comparison: normalized sequence alignment.
Bioinform.
Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
2001 Misc conf
An Improved Upper Bound on the Size of Planar Convex-Hulls.
COCOON
Abdullah N. Arslan, Ömer Egecioglu
1999 — conf
An Efficient Uniform-Cost Normalized Edit Distance Algorithm.
SPIRE/CRIWG
Abdullah N. Arslan, Ömer Egecioglu