Aaron T. L. Lun

13 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
Powering single-cell analyses in the browser with WebAssembly.
J. Open Source Softw.
Aaron T. L. Lun, Jayaram Kancherla
2023 J jnl
gesel: a JavaScript package for client-side gene set enrichment.
J. Open Source Softw.
Aaron T. L. Lun, Jayaram Kancherla
2022 J jnl
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.
Bioinform.
Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso
2022 J jnl
basilisk: a Bioconductor package for managing Python environments.
J. Open Source Softw.
Aaron T. L. Lun
2018 J jnl
beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.
PLoS Comput. Biol.
Aaron T. L. Lun, Hervé Pagès, Mike L. Smith
2018 J jnl
iSEE: Interactive SummarizedExperiment Explorer.
F1000Research
Kevin C. Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T. L. Lun
2017 J jnl
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.
Bioinform.
Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun, Quin F. Wills
2016 J jnl
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline.
F1000Research
Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth
2016 J jnl
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments.
F1000Research
Aaron T. L. Lun, Malcolm Perry, Elizabeth Ing-Simmons
2016 — ch.
It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.
Statistical Genomics
Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth
2015 — —
Statistical analyses of high-throughput sequencing data to study chromatin structure and organisation.
Aaron T. L. Lun
2015 J jnl
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.
BMC Bioinform.
Aaron T. L. Lun, Gordon K. Smyth
2012 J jnl
FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry.
BMC Bioinform.
Aaron T. L. Lun, Jason W. H. Wong, Kevin M. Downard