Aaron R. Quinlan

20 papers Journal 20
YearRankTypeTitle / Venue / Authors
2025 J jnl
Vcfexpress: flexible, rapid user-expressions to filter and format VCFs.
Bioinform.
Brent S. Pedersen, Aaron R. Quinlan
2022 J jnl
Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets using SVAFotate.
BMC Bioinform.
Thomas J. Nicholas, Michael J. Cormier, Aaron R. Quinlan
2022 J jnl
Author Correction: Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools.
Nat. Comput. Sci.
Hao Hou, Brent S. Pedersen, Aaron R. Quinlan
2022 J jnl
Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies.
BMC Bioinform.
Michael J. Cormier, Brent S. Pedersen, Pinar Bayrak-Toydemir, Aaron R. Quinlan
2022 J jnl
trfermikit: a tool to discover VNTR-associated deletions.
Bioinform.
Peter McHale, Aaron R. Quinlan
2021 J jnl
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools.
Nat. Comput. Sci.
Hao Hou, Brent S. Pedersen, Aaron R. Quinlan
2021 J jnl
Unfazed: parent-of-origin detection for large and small de novo variants.
Bioinform.
Jonathan R. Belyeu, Thomas A. Sasani, Brent S. Pedersen, Aaron R. Quinlan
2020 J jnl
XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data.
PLoS Comput. Biol.
Jordan A. Berg, Jonathan R. Belyeu, Jeffrey T. Morgan, Yeyun Ouyang, Alex J. Bott, Aaron R. Quinlan, Jason Gertz, Jared Rutter
2018 J jnl
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.
Nucleic Acids Res.
Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve
2018 J jnl
Mosdepth: quick coverage calculation for genomes and exomes.
Bioinform.
Brent S. Pedersen, Aaron R. Quinlan
2018 J jnl
hts-nim: scripting high-performance genomic analyses.
Bioinform.
Brent S. Pedersen, Aaron R. Quinlan
2017 J jnl
A Parallel Algorithm for $N$-Way Interval Set Intersection.
Proc. IEEE
Ryan M. Layer, Aaron R. Quinlan
2017 J jnl
cyvcf2: fast, flexible variant analysis with Python.
Bioinform.
Brent S. Pedersen, Aaron R. Quinlan
2015 J jnl
Population-based structural variation discovery with Hydra-Multi.
Bioinform.
Michael R. Lindberg, Ira M. Hall, Aaron R. Quinlan
2014 J jnl
Poretools: a toolkit for analyzing nanopore sequence data.
Bioinform.
Nicholas J. Loman, Aaron R. Quinlan
2013 J jnl
Binary Interval Search: a scalable algorithm for counting interval intersections.
Bioinform.
Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan
2013 J jnl
GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations.
PLoS Comput. Biol.
Umadevi Paila, Brad A. Chapman, Rory D. Kirchner, Aaron R. Quinlan
2011 J jnl
BamTools: a C++ API and toolkit for analyzing and managing BAM files.
Bioinform.
Derek W. Barnett, Erik K. Garrison, Aaron R. Quinlan, Michael Strömberg, Gabor T. Marth
2011 J jnl
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
Bioinform.
Ryan K. Dale, Brent S. Pedersen, Aaron R. Quinlan
2010 J jnl
BEDTools: a flexible suite of utilities for comparing genomic features.
Bioinform.
Aaron R. Quinlan, Ira M. Hall