Aaron Golden

18 papers Journal 11Unranked 7
YearRankTypeTitle / Venue / Authors
2020 J jnl
AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX.
Bioinform.
Kevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden
2016 — conf
Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies.
ICSC
David Rhee, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden
2015 J jnl
Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach.
BMC Bioinform.
Pilib Ó Broin, Terry J. Smith, Aaron Golden
2015 J jnl
toxoMine: an integrated omics data warehouse for
Database J. Biol. Databases Curation
David B. Rhee, Matthew McKnight Croken, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden
2014 — conf
Using SAGA and the Open Science Grid to Search for Aptamers.
XSEDE
Kevin R. Shieh, Pilib Ó Broin, David Rhee, Matthew Levy, Aaron Golden
2013 — conf
'Spring through the gateway': deploying genomic workflows with XSEDE.
XSEDE
David Rhee, Joseph Hargitai, R. Brent Calder, Pilib Ó Broin, Kevin R. Shieh, Aaron Golden
2013 J jnl
Gene-set analysis is severely biased when applied to genome-wide methylation data.
Bioinform.
Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe
2012 — conf
The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDE.
HealthGrid
Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally
2009 J jnl
BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server.
Bioinform.
Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden
2009 J jnl
Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation.
Int. J. High Perform. Comput. Appl.
James Mc Donald, Aaron Golden, S. Gerard Jennings
2007 J jnl
Thermodynamically constrained steady state solution space of the E. coli metabolic network.
BMC Syst. Biol.
Ronan M. T. Fleming, Aaron Golden, Heinz-Peter Nasheuer
2006 — conf
Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques.
GCCB
Nigel McCoy, Shaun Mahony, Aaron Golden
2006 J jnl
Self-organizing neural networks to support the discovery of DNA-binding motifs.
Neural Networks
Shaun Mahony, Panayiotis V. Benos, Terry J. Smith, Aaron Golden
2005 — conf
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles.
ISMB (Supplement of Bioinformatics)
Shaun Mahony, Aaron Golden, Terry J. Smith, Panayiotis V. Benos
2005 J jnl
Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences.
Artif. Intell. Rev.
Shaun Mahony, David Hendrix, Terry J. Smith, Aaron Golden
2005 J jnl
Transcription factor binding site identification using the self-organizing map.
Bioinform.
Shaun Mahony, David Hendrix, Aaron Golden, Terry J. Smith, Daniel S. Rokhsar
2004 J jnl
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models.
BMC Bioinform.
Shaun Mahony, James O. McInerney, Terry J. Smith, Aaron Golden
2003 — conf
A New Approach to Gene Prediction Using the Self-Organizing Map.
CSB
Shaun Mahony, Terry J. Smith, James O. McInerney, Aaron Golden