Aaron Golden - RankMe

18 papers Journal 11Unranked 7

Year	Rank	Type	Title / Venue / Authors
2020	J	`jnl`	AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX. Bioinform. Kevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden
2016	—	`conf`	Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies. ICSC David Rhee, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden
2015	J	`jnl`	Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach. BMC Bioinform. Pilib Ó Broin, Terry J. Smith, Aaron Golden
2015	J	`jnl`	toxoMine: an integrated omics data warehouse for Database J. Biol. Databases Curation David B. Rhee, Matthew McKnight Croken, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden
2014	—	`conf`	Using SAGA and the Open Science Grid to Search for Aptamers. XSEDE Kevin R. Shieh, Pilib Ó Broin, David Rhee, Matthew Levy, Aaron Golden
2013	—	`conf`	'Spring through the gateway': deploying genomic workflows with XSEDE. XSEDE David Rhee, Joseph Hargitai, R. Brent Calder, Pilib Ó Broin, Kevin R. Shieh, Aaron Golden
2013	J	`jnl`	Gene-set analysis is severely biased when applied to genome-wide methylation data. Bioinform. Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe
2012	—	`conf`	The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDE. HealthGrid Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally
2009	J	`jnl`	BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server. Bioinform. Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden
2009	J	`jnl`	Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation. Int. J. High Perform. Comput. Appl. James Mc Donald, Aaron Golden, S. Gerard Jennings
2007	J	`jnl`	Thermodynamically constrained steady state solution space of the E. coli metabolic network. BMC Syst. Biol. Ronan M. T. Fleming, Aaron Golden, Heinz-Peter Nasheuer
2006	—	`conf`	Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques. GCCB Nigel McCoy, Shaun Mahony, Aaron Golden
2006	J	`jnl`	Self-organizing neural networks to support the discovery of DNA-binding motifs. Neural Networks Shaun Mahony, Panayiotis V. Benos, Terry J. Smith, Aaron Golden
2005	—	`conf`	Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. ISMB (Supplement of Bioinformatics) Shaun Mahony, Aaron Golden, Terry J. Smith, Panayiotis V. Benos
2005	J	`jnl`	Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences. Artif. Intell. Rev. Shaun Mahony, David Hendrix, Terry J. Smith, Aaron Golden
2005	J	`jnl`	Transcription factor binding site identification using the self-organizing map. Bioinform. Shaun Mahony, David Hendrix, Aaron Golden, Terry J. Smith, Daniel S. Rokhsar
2004	J	`jnl`	Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinform. Shaun Mahony, James O. McInerney, Terry J. Smith, Aaron Golden
2003	—	`conf`	A New Approach to Gene Prediction Using the Self-Organizing Map. CSB Shaun Mahony, Terry J. Smith, James O. McInerney, Aaron Golden