Aaron E. Darling

19 papers C 3Journal 13Unranked 3
YearRankTypeTitle / Venue / Authors
2023 J jnl
Fidelity of hyperbolic space for Bayesian phylogenetic inference.
PLoS Comput. Biol.
Matthew Macaulay, Aaron E. Darling, Mathieu Fourment
2021 J jnl
qc3C: Reference-free quality control for Hi-C sequencing data.
PLoS Comput. Biol.
Matthew Z. DeMaere, Aaron E. Darling
2015 J jnl
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.
Bioinform.
David Coil, Guillaume Jospin, Aaron E. Darling
2015 J jnl
Metagenomic Chromosome Conformation Capture (3C): techniques, applications, and challenges.
F1000Research
Michael Liu, Aaron E. Darling
2013 C ed.
Algorithms in Bioinformatics - 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings
WABI
Aaron E. Darling, Jens Stoye
2012 C conf
Hidden Breakpoints in Genome Alignments.
WABI
Birte Kehr, Knut Reinert, Aaron E. Darling
2011 J jnl
Mauve Assembly Metrics.
Bioinform.
Aaron E. Darling, Andrew J. Tritt, Jonathan A. Eisen, Marc T. Facciotti
2011 J jnl
The rise and fall of breakpoint reuse depending on genome resolution.
BMC Bioinform.
Oliver Attie, Aaron E. Darling, Sophia Yancopoulos
2009 J jnl
A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats.
IEEE ACM Trans. Comput. Biol. Bioinform.
Todd J. Treangen, Aaron E. Darling, Guillaume Achaz, Mark A. Ragan, Xavier Messeguer, Eduardo P. C. Rocha
2009 J jnl
Reordering contigs of draft genomes using the Mauve Aligner.
Bioinform.
Anna I. Rissman, Bob Mau, Bryan S. Biehl, Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna
2009 J jnl
Seevolution: visualizing chromosome evolution.
Bioinform.
Andrés Esteban-Marcos, Aaron E. Darling, Mark A. Ragan
2008 J jnl
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.
Nucleic Acids Res.
Jeremy D. Glasner, Guy Plunkett III, Bradley D. Anderson, David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Thomas Hampton, Paul Liss, Michael Rusch, Matthew Shaker, Lorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna
2008 — conf
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats.
ISBRA
Todd J. Treangen, Aaron E. Darling, Mark A. Ragan, Xavier Messeguer
2006 J jnl
ASAP: a resource for annotating, curating, comparing, and disseminating genomic data.
Nucleic Acids Res.
Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett III, Eric L. Cabot, Aaron E. Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, Nicole T. Perna
2006 C conf
Procrastination Leads to Efficient Filtration for Local Multiple Alignment.
WABI
Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna
2004 J jnl
GRIL: genome rearrangement and inversion locator.
Bioinform.
Aaron E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna
2004 — conf
Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes.
Comparative Genomics
Bob Mau, Aaron E. Darling, Nicole T. Perna
2004 — conf
Multiple Alignment of Rearranged Genomes.
CSB
Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna
2003 J jnl
ASAP, a systematic annotation package for community analysis of genomes.
Nucleic Acids Res.
Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron E. Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael K. Gilson, Bryan S. Biehl, Frederick R. Blattner, Nicole T. Perna