A. Keith Dunker

75 papers C 5Misc 38Journal 23Unranked 9
YearRankTypeTitle / Venue / Authors
2022 J jnl
Characterization of intrinsically disordered regions in proteins informed by human genetic diversity.
PLoS Comput. Biol.
Shehab S. Ahmed, Zaara T. Rifat, Ruchi Lohia, Arthur J. Campbell, A. Keith Dunker, M. Sohel Rahman, Sumaiya Iqbal
2021 Misc conf
AI for infectious disease modelling and therapeutics.
PSB
Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker
2021 J jnl
DescribePROT: database of amino acid-level protein structure and function predictions.
Nucleic Acids Res.
Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan
2021 Misc conf
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis.
PSB
Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky
2020 Misc ed.
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021
PSB
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein
2020 J jnl
DisProt: intrinsic protein disorder annotation in 2020.
Nucleic Acids Res.
András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
2020 Misc conf
Many-to-One Binding by Intrinsically Disordered Protein Regions.
PSB
Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker
2020 Misc conf
Session Introduction.
PSB
Lukasz A. Kurgan, Predrag Radivojac, Joel L. Sussman, A. Keith Dunker
2019 Misc ed.
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019
PSB
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein
2019 J jnl
Entropy, Fluctuations, and Disordered Proteins.
Entropy
Eshel Faraggi, A. Keith Dunker, Robert L. Jernigan, Andrzej Kloczkowski
2018 Misc ed.
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018
PSB
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein
2018 — conf
Identification of intrinsic disorder in complexes from Protein Data Bank.
ICCABS
Jianhong Zhou, Christopher J. Oldfield, Fei Huang, Wenying Yan, Bairong Shen, A. Keith Dunker
2017 Misc ed.
Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein
2017 J jnl
DisProt 7.0: a major update of the database of disordered proteins.
Nucleic Acids Res.
Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto
2016 Misc ed.
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie
2015 Misc ed.
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie
2015 J jnl
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots.
BMC Bioinform.
Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
2014 J jnl
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms.
BMC Bioinform.
Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang
2014 Misc ed.
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie
2014 J jnl
Identification of genes and pathways involved in kidney renal clear cell carcinoma.
BMC Bioinform.
William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang
2014 J jnl
Improving protein order-disorder classification using charge-hydropathy plots.
BMC Bioinform.
Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
2014 J jnl
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.
Nucleic Acids Res.
Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa
2013 Misc ed.
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2013 J jnl
D
Nucleic Acids Res.
Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough
2012 Misc ed.
Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2012 Misc conf
Intrinsic Protein Disorder and Protein-Protein Interactions.
Pacific Symposium on Biocomputing
Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
2012 J jnl
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins.
Bioinform.
Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
2012 Misc conf
Session introduction.
Pacific Symposium on Biocomputing
Jianhan Chen, Jianlin Cheng, A. Keith Dunker
2012 Misc conf
Subclassifying Disordered Proteins by the CH-CDF Plot Method.
Pacific Symposium on Biocomputing
Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
2011 Misc ed.
Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2011 J jnl
In-silico prediction of disorder content using hybrid sequence representation.
BMC Bioinform.
Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
2010 J jnl
Archaic chaos: intrinsically disordered proteins in Archaea.
BMC Syst. Biol.
Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky
2010 Misc ed.
Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2009 — conf
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants.
BICoB
Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu
2009 Misc ed.
Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2009 — conf
Protein sequence alignment and structural disorder: a substitution matrix for an extended alphabet.
KDD Workshop on Statistical and Relational Learning in Bioinformatics
Uros Midic, A. Keith Dunker, Zoran Obradovic
2008 Misc ed.
Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2008 J jnl
Malleable Machines in Transcription Regulation: The Mediator Complex.
PLoS Comput. Biol.
Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter
2007 Misc ed.
Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2007 J jnl
Composition Profiler: a tool for discovery and visualization of amino acid composition differences.
BMC Bioinform.
Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi
2007 J jnl
DisProt: the Database of Disordered Proteins.
Nucleic Acids Res.
Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker
2007 J jnl
Exploring alternative knowledge representations for protein secondary-structure prediction.
Int. J. Data Min. Bioinform.
Uros Midic, A. Keith Dunker, Zoran Obradovic
2007 — conf
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3.
BIOCOMP
Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker
2007 C conf
Intrinsically Disordered Proteins in Human Diseases.
BIBE
Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker
2007 C conf
Intrinsically Disordered Proteins: An Update.
BIBE
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
2007 C conf
Intrinsically Disordered Proteins: Predictions and Applications.
BIBE
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
2007 — conf
Protein Intrinsic Disorder, Cell Signaling, Drug Discovery, and Alternative Splicing.
BIOCOMP
A. Keith Dunker
2006 Misc ed.
Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006
Pacific Symposium on Biocomputing
Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter
2006 J jnl
Length-dependent prediction of protein intrinsic disorder.
BMC Bioinform.
Kang Peng, Predrag Radivojac, Slobodan Vucetic, A. Keith Dunker, Zoran Obradovic
2005 Misc ed.
Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005
Pacific Symposium on Biocomputing
Russ B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter
2005 J jnl
DisProt: a database of protein disorder.
Bioinform.
Slobodan Vucetic, Zoran Obradovic, Vladimir Vacic, Predrag Radivojac, Kang Peng, Lilia M. Iakoucheva, Marc S. Cortese, J. David Lawson, Celeste J. Brown, Jason G. Sikes, Crystal D. Newton, A. Keith Dunker
2005 C conf
Improving Protein Secondary-Structure Prediction by Predicting Ends of Secondary-Structure Segments.
CIBCB
Uros Midic, A. Keith Dunker, Zoran Obradovic
2005 C conf
Intrinsic Disorder and Protein modifications: Building an SVM Predictor for Methylation.
CIBCB
Kenneth Daily, Predrag Radivojac, A. Keith Dunker
2005 J jnl
Optimizing Long Intrinsic Disorder Predictors with Protein Evolutionary Information.
J. Bioinform. Comput. Biol.
Kang Peng, Slobodan Vucetic, Predrag Radivojac, Celeste J. Brown, A. Keith Dunker, Zoran Obradovic
2005 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2004 Misc ed.
Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein
2004 J jnl
Classification and knowledge discovery in protein databases.
J. Biomed. Informatics
Predrag Radivojac, Nitesh V. Chawla, A. Keith Dunker, Zoran Obradovic
2004 — conf
Feature Selection Filters Based on the Permutation Test.
ECML
Predrag Radivojac, Zoran Obradovic, A. Keith Dunker, Slobodan Vucetic
2004 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2003 Misc conf
Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions.
Pacific Symposium on Biocomputing
Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker
2003 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2003 Misc ed.
Proceedings of the 8th Pacific Symposium on Biocomputing, PSB 2003, Lihue, Hawaii, USA, January 3-7, 2003
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2003 Misc conf
Special Paper - Introduction.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2002 Misc conf
Improving Sequence Alignments For Intrinsically Disordered Proteins.
Pacific Symposium on Biocomputing
Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker
2002 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2002 Misc ed.
Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2001 Misc conf
Disorder and Flexibility in Protein Structure and Function - Session Introduction.
Pacific Symposium on Biocomputing
Clay Bracken, Malin M. Young, A. Keith Dunker
2001 Misc ed.
Proceedings of the 6th Pacific Symposium on Biocomputing, PSB 2001, Hawaii, USA, January 3-7, 2001
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2001 Misc conf
The Protein Non-Folding Problem: Amino Acid Determinants of Intrinsic Order and Disorder.
Pacific Symposium on Biocomputing
R. M. Williams, Zoran Obradovic, V. Mathura, W. Braun, E. C. Garner, J. Young, S. Takayama, Celeste J. Brown, A. Keith Dunker
2000 J jnl
Intelligent Data Analysis for Protein Disorder Prediction.
Artif. Intell. Rev.
Pedro Romero, Zoran Obradovic, A. Keith Dunker
1999 Misc conf
Disorder in Protein Structure and Function - Session Introduction.
Pacific Symposium on Biocomputing
C. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich
1999 Misc ed.
Proceedings of the 4th Pacific Symposium on Biocomputing, PSB 1999, The Orchid at Mauna Lani, Big Island of Hawaii, USA, January 4-9, 1999
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
1997 — conf
Identifying disordered regions in proteins from amino acid sequence.
ICNN
Pedro Romero, Zoran Obradovic, C. Kissinger, J. E. Villafranca, A. Keith Dunker
1994 — conf
Identifying Repeated Structural Elements in Folded Proteins.
HICSS (5)
R. T. Miller, Richard J. Douthart, A. Keith Dunker
1994 — conf
Protein Structure Prediction: Introductios.
HICSS (5)
A. Keith Dunker, Richard H. Lathrop